BAC Information

Click to search

BAC

Clone NameMSMg01-394F22
Chromosome15 (Build37)
Map Location 78,280,584 - 78,280,765
singlet/doubletsinglet
Overlap geneTmprss6
Upstream gene9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17
Downstream geneIl2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394F22.T7 (MSMg01no394_f22.b1)MSMg01-394F22.TJ (MSMg01no394_f22.g1)
ACCAG495442AG495443
length799819
length of high quality
(start - end)
52 (126 - 177)182 (79 - 260)
definitionCHROMAT_FILE: MSMg01no394_f22.b1 PHD_FILE: MSMg01no394_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:44 2005CHROMAT_FILE: MSMg01no394_f22.g1 PHD_FILE: MSMg01no394_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTATACTTTGCGTGCGCTATACCACTCCTACTTCCCAGAGTACCGCG
CCAATCCAGCATTCCACATGTTATACAACATCTCTGCAGGCTCAGGTCAC
ACACAATCCCAGCATGAATAGTGGGGGCAGGCATGAAGTCCTACCCCTAG
CTGAGAAACTATTGGTAATTGGTGGCCCCTAGGAGAAGGAGGGACAGCTT
TCTTTATGAATGCGACCCCTGAGGGGTAGTCTACCCTTCAGTGACAGCCG
CACATCGGAGAGCATATGGGCCAAACAAATTGTGTTTCGAATTTTGTTTT
TATTTGAAGAGGACACAACGTTGGCTTGGTAGAAAAGGCAGGTAGGTCTA
GGAGCAGAGAGACTTGAGGCTATACGCTTCAACGCATTGTGAGATACTCT
CAAAGAGCTAACATAAAAACCCCATAGTGGGGAAGAACATTCATAGAGAA
TCCACTGATCTCTTATGTAGCACTTTCTTTTGCTTCTTCCTCCTTCCCCT
TCCTTTCGTTCGTGTGCTAGTGCACGCCTGCCCGCCCCGTCCGCCTTTCT
TCCCGTCCTATACCTTCCCCCTTTCGCGCTGCATTTGCCCTCCCCCTTTT
CCGCACCTCCAATCCCTTCTTCTTTCTCCCTGTTTCCTTTCTCGTTCCCC
TCTCTCCCTGTCCCCCCCTCCCCCTCTTCTCCCTTCCTTTCATTGCTCGC
CGCCGCCTCCCTTCTTGACATTTCCTCTCACTTTCTTTTTTTCCCTCACC
CCCTCCACTTCTACCCGGACCTTTCTCACAAACTCTGCTTTTTCACTTN
TTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGACTCACAGTTGAACGAG
CCTCACAGCTTGTGGGAAGCCTGAGGCCCAGAGGCTGAGTCATTTGCTAA
AAGTCCCTGTGGCTTGTGACGTCATCACTGAGCTCAGGCAGCTGGCCGGC
CCCCAGGGCATGATTGCCCAGCCGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGNNTTNNTTTNNNNTTTTTTTTTTTTCTTTTTTTTCTCTTC
TTTTCTTTTCTTTCCTCCCTTCCCTCTTTTCTTTTTCTTTCCCTCTTCTT
CCTTTTTTTTTTTTTCTCCCCTCTCTTCTTCCCCCTCTTCCCCCTTTTTC
TCTCTTCCCTTTCCTTCTCTTCTCTCCCCCTCCTTTTCCCCCCTCCCTTC
TTCTTTTTTTTTTTCCCCTTCTTTCTCCTTTCCTTTTTTTTTTCCTTTTC
TCCCCCCTTCCACTCTCCCTCTTCCCTTTTCTCTCTTTTCTTTTCTTTTC
TTTCCTTTCTCCTTTACTTTCTCCTTTTTACTTTTCCCCCCCCTTCTCTT
CTTTTTCTCCCTTTTTACCTTCTTTTTCTTCTTTTCCCCTTCATTTTCTC
TTTTCTCCCCTTCCTTTTTTTTTTACCCCATCCTTCTCTTTTTTTCTTTC
TCTCTTTTTTCTTTTTATTTCTTTTCTCCCCCCCTCCCTAATTTTTTCTT
TATTTTACTCCTACATCCCCTTATTCCTTTCCCCTAATCTCTTCTACTAT
TCCTCTTTCCTTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_f22.g1 MSMg01no394_f22.g1 CHROMAT_FILE:
MSMg01no394_f22.g1 PHD_FILE: MSMg01no394_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:44 2005
         (182 letters)



>mm_chr15_78280421_78281002
          Length = 582

 Score =  352 bits (182), Expect = e-102
 Identities = 182/182 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggactcacagttgaacgagcctcacagcttgtgggaagcctgaggcccagaggctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cagggactcacagttgaacgagcctcacagcttgtgggaagcctgaggcccagaggctga 286

                                                                       
Query: 61  gtcatttgctaaaagtccctgtggcttgtgacgtcatcactgagctcaggcagctggccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtcatttgctaaaagtccctgtggcttgtgacgtcatcactgagctcaggcagctggccg 226

                                                                       
Query: 121 gcccccagggcatgattgcccagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gcccccagggcatgattgcccagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 166

             
Query: 181 tg 182
           ||
Sbjct: 165 tg 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 22
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)