BAC Information

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BAC

Clone NameMSMg01-395D18
Chromosome15 (Build37)
Map Location 78,665,656 - 78,810,659
singlet/doubletdoublet
Overlap geneLOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp
Upstream geneMyh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104
Downstream geneH1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395D18.T7 (MSMg01no395_d18.b1)MSMg01-395D18.TJ (MSMg01no395_d18.g1)
ACCAG496101AG496102
length770783
length of high quality
(start - end)		489 (65 - 553)453 (73 - 525)
definitionCHROMAT_FILE: MSMg01no395_d18.b1 PHD_FILE: MSMg01no395_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:00 2005CHROMAT_FILE: MSMg01no395_d18.g1 PHD_FILE: MSMg01no395_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,810,171 - 78,810,659)(78,665,656 - 78,666,108)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCCAGGCTTCTCTCTGGCCCCTCAGCAATCCTCCAGGAGGCCCCAGGTCT
CTGGTACTTACAATTCTAGCCCCCAGATAAAAACATCATTGCCCCCAGAC
TCACTCAGCCTCAGCCGACACAGTCTGGTAGGGAACATGCTGGGTGACTA
AGCCAGAGGGCTACGGGAAGTCAGCACCACAAGGGTGGGTTTGTAAGCAT
TTGAAGCTCAGATTGCCTAGAGCAAGCCAGAGCATCTATGATACATCCAC
GTGTGATGTGGAACAAGAGACTTCACACGTCAGTGTGTGGACAGCGTGAA
TCTAATTGTCCTTGAGATGACGACCAAACAGAGTCAGGCACACCCTGCAT
GGGACGTGGGGCTGGGAGCATAGAAGGCAACAATAATTACTGGGTGGCAT
ACAGACAATGTACAGCAGTCCCACACTTATCTCACACCTCTCTCCACCAA
GGCCTTCCCCGCCGCTCCTCCCAGTCCTGCCGGGTGTTGGTGGCCTGTGT
TGGTGACCATTAGCTATTTTGATAAGGCAAATCCTGCCCATGCATGGCTT
GAAGGACCACTATACCTAGNTAGTCATGTTTGCTTGGCTATCATGCGTTT
CTCTGCCCACAAAGAACAACCCGGGCAGAATCCCTGTAGGAGATGGGAAA
CCTCCCGGTACAGAAACATCCCCCATATTCCTCCCCAGCCTCTTGGGAAT
TTTGGGTTTCTTCCCCCTAA

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCTGTTGCAGGGAGACATCTTGCCTGG
TGGACTTGCCCTCTCAGATAAGCGGTGAGCTCCCTGCCACTCAAAGGATG
TGTGACAGCGGGACTGTCAGACACACTCAGTGTTGCAGGAGGATGTGGCT
AACACATGTGGGAGTCTTTCTGACACTTGAGGATTAGAGAGAGCAACAGT
GAGCTTGGAGCTTTTCATGTGCTGTGAGAGGCCACAGACCAATTTCCCAG
GGCGATGTCCACACTGCCCAGTTATGTGAAGCCGCGGAGGAAGTGGCCCC
ATCCCCTTGGCCCTGTGTCCTCGCTGGACAATGGGCCGTGAGGATGGGAA
AGAAAGAATTCAGCCAGCCTGCCAGGCAGCGCCATGCAGCAGGGTCCGGC
TGGGCCTCTGACCATCTTCCTCTCATCCCCAGCCTAGCCATCTGAGCAGG
AAGCTAGGAGCCAGCAAGCCTGGTGGGGGTGTGGTACGAGGACAGGCGCG
TTACTGGTTGAACTGTCGTCTGTGCCCTGCGTGCCGCTGACTTCTGGTCC
TTGACCTGTCACTTCCCCTGGGTAAATTCCACATGGCAGGGCGAATATTT
GTTATTCCTTTCGCTTAACTTGCTTCTCTTTGCGTTTCCCTTTTCCCGTC
TTCCGCTCCTTCTTTACCTTTCCCCCTTTTTTCTCCCTCTCCTTTTATTT
TCCCCTTTTTTTTCCCTTCCTCCTTTTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_d18.b1 MSMg01no395_d18.b1 CHROMAT_FILE:
MSMg01no395_d18.b1 PHD_FILE: MSMg01no395_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:00 2005
         (489 letters)



>mm_chr15_78809971_78810859
          Length = 889

 Score =  938 bits (485), Expect = 0.0
 Identities = 488/489 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcccctcagcaatcctccaggaggccccaggtctctggtacttacaattctagccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tggcccctcagcaatcctccaggaggccccaggtctctggtacttacaattctagccccc 630

                                                                       
Query: 61  agataaaaacatcattgcccccagactcactcagcctcagccgacacagtctggtaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agataaaaacatcattgcccccagactcactcagcctcagccgacacagtctggtaggga 570

                                                                       
Query: 121 acatgctgggtgactaagccagagggctacgggaagtcagcaccacaagggtgggtttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acatgctgggtgactaagccagagggctacgggaagtcagcaccacaagggtgggtttgt 510

                                                                       
Query: 181 aagcatttgaagctcagattgcctagagcaagccagagcatctatgatacatccacgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aagcatttgaagctcagattgcctagagcaagccagagcatctatgatacatccacgtgt 450

                                                                       
Query: 241 gatgtggaacaagagacttcacacgtcagtgtgtggacagcgtgaatctaattgtccttg 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 449 gatgtggaacaagagacttcacacgtcagtgtgtggaaagcgtgaatctaattgtccttg 390

                                                                       
Query: 301 agatgacgaccaaacagagtcaggcacaccctgcatgggacgtggggctgggagcataga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agatgacgaccaaacagagtcaggcacaccctgcatgggacgtggggctgggagcataga 330

                                                                       
Query: 361 aggcaacaataattactgggtggcatacagacaatgtacagcagtcccacacttatctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aggcaacaataattactgggtggcatacagacaatgtacagcagtcccacacttatctca 270

                                                                       
Query: 421 cacctctctccaccaaggccttccccgccgctcctcccagtcctgccgggtgttggtggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cacctctctccaccaaggccttccccgccgctcctcccagtcctgccgggtgttggtggc 210

                    
Query: 481 ctgtgttgg 489
           |||||||||
Sbjct: 209 ctgtgttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no395_d18.g1 MSMg01no395_d18.g1 CHROMAT_FILE:
MSMg01no395_d18.g1 PHD_FILE: MSMg01no395_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:01 2005
         (453 letters)



>mm_chr15_78665456_78666308
          Length = 853

 Score =  861 bits (445), Expect = 0.0
 Identities = 451/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgttgcagggagacatcttgcctggtggacttgccctctcagataagcggtgagctc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tgctgttgcagggagacatcttgcctggtggagttgccctctcagataagcggtgagctc 260

                                                                       
Query: 61  cctgccactcaaaggatgtgtgacagcgggactgtcagacacactcagtgttgcaggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgccactcaaaggatgtgtgacagcgggactgtcagacacactcagtgttgcaggagg 320

                                                                       
Query: 121 atgtggctaacacatgtgggagtctttctgacacttgaggattagagagagcaacagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 atgtggctaacacatgtgggagtctttctgacacttgaggattagagagagcagcagtga 380

                                                                       
Query: 181 gcttggagcttttcatgtgctgtgagaggccacagaccaatttcccagggcgatgtccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttggagcttttcatgtgctgtgagaggccacagaccaatttcccagggcgatgtccac 440

                                                                       
Query: 241 actgcccagttatgtgaagccgcggaggaagtggccccatccccttggccctgtgtcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgcccagttatgtgaagccgcggaggaagtggccccatccccttggccctgtgtcctc 500

                                                                       
Query: 301 gctggacaatgggccgtgaggatgggaaagaaagaattcagccagcctgccaggcagcgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctggacaatgggccgtgaggatgggaaagaaagaattcagccagcctgccaggcagcgc 560

                                                                       
Query: 361 catgcagcagggtccggctgggcctctgaccatcttcctctcatccccagcctagccatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgcagcagggtccggctgggcctctgaccatcttcctctcatccccagcctagccatc 620

                                            
Query: 421 tgagcaggaagctaggagccagcaagcctggtg 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 tgagcaggaagctaggagccagcaagcctggtg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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