Query= MSMg01no395_d20.b1 MSMg01no395_d20.b1 CHROMAT_FILE:
MSMg01no395_d20.b1 PHD_FILE: MSMg01no395_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:01 2005
(609 letters)
>mm_chr15_26923616_26924624
Length = 1009
Score = 884 bits (457), Expect = 0.0
Identities = 569/645 (88%), Gaps = 63/645 (9%)
Strand = Plus / Plus
Query: 5 gaattcactctattactatggctgcaaaatgtctctgacactaggtatagtgctgcatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gaattcactctattactatggctgcaaaatgtctctgacactaggtatagtgctgcatag 247
Query: 65 gagggattcaattaatgtctacacatatcagttctacaccacgtagaagtagatccaagt 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 248 gagggattcaattaatgtctacacatatcagttctacatcacgtagaagtagatccaagt 307
Query: 125 agaaacctgagagcataaaggtgatgtgctatgttctttccctttgtttctaagcttgaa 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 308 agaaacctgagagcataaaggtgatatgctatgttctttccctttgtttctaagcttgaa 367
Query: 185 caaactgactccaacacttgtattccacaagaagagaaatgcctctcagtctgtaatgag 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caaactgactccagcacttgtattccacaagaagagaaatgcctctcagtctgtaatgag 427
Query: 245 atttcgaaatgccattacacaaattccaatgatctagggccagagagagaaaggttaatt 304
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 attttgaaatgccattacacaaattccaatgatctagggccagagagagaaaggttaatt 487
Query: 305 aaataacataatttgttgtc-attgaatgacctgtactcttggcacactgctgtaaatgt 363
|||||||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 488 aaataacataatttgttg-ctattgaacgacctgtactcttggcatactgctgtaaatgt 546
Query: 364 aaacatagcctggactcttccttccaaaagaacaacttatccctacagattcttttgtgt 423
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 547 aaacatagcctggactcttccttccaaaagaacaagttatccctacagattcttctgtgt 606
Query: 424 tgtgtagggactctacaatta--------------------------------------- 444
||||||||||||| |||||||
Sbjct: 607 tgtgtagggactccacaattattacacacacacacacacacacacacacacacacacaca 666
Query: 445 cacacacacacacgtgtgtgtgtgtgtgtgtgtgtttgtgtgtaatacatatacataccc 504
||||||||||||| || ||| ||| |||||||||||||||
Sbjct: 667 cacacacacacacatgcgtg---------------------gta-tacatatacataccc 704
Query: 505 taatttctaggctttaagaacataagtttatttgaaatcattttacacatgtaattaaac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 taatttctaggctttaagaacataagtttatttgaaatcattttacacatgtaattaaac 764
Query: 565 aatattgaaatgtatcaccactgataatcatggaagaactcaaat 609
|||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 765 aatattaaaatgtatcaccattgataatcatggaagaactcaaat 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_d20.g1 MSMg01no395_d20.g1 CHROMAT_FILE:
MSMg01no395_d20.g1 PHD_FILE: MSMg01no395_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:01 2005
(562 letters)
>mm_chr15_27081070_27082031
Length = 962
Score = 833 bits (431), Expect = 0.0
Identities = 449/455 (98%)
Strand = Plus / Minus
Query: 1 tgtctctcatagattttcaaacacccctgttaattcatgatatcccaaattggcctgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgtctctcatagattttcaaacacccctgttaattcatgatatcccaaattggcctgact 396
Query: 61 gactgggtagtcccgcctctttgtggctacagaaatgttttcatgggctaagaagggcat 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gactgggtagtcccacctctttgtggctacagaaatgttttcatgggctaagaagggcat 336
Query: 121 ggggatacaggattcagagcatagctgatgttaatgttaaaactaagaatcaatgataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggggatacaggattcagagcatagctgatgttaatgttaaaactaagaatcaatgataat 276
Query: 181 gggaaaagagtaaggagttgatgccccctgagatgctcctctcagaatcacatttaactc 240
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 275 gggaaaagagtaaagagttgatgccccttgagatgctcctctcagaatcacatttaactc 216
Query: 241 tgcatctctacagcatcagtgcaaaaacacagctctcgtctcaccagatagagatagctt 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 215 tgcatctctacagcatcagtgcaaaaacacagctctcatctcaccagatagagatagctt 156
Query: 301 attctggagcctaatataagtgagcatagctcaggatcatgggtgtaggctatcccaaat 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 attctggagcctaatataaatgagcatagctcaggatcatgggtgtaggctatcccaaat 96
Query: 361 ttcatattcctatgtgctcacagttttataaagtccttatagcaatggtgcatcaccatt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ttcatattcccatgtgctcacagttttataaagtccttatagcaatggtgcatcaccatt 36
Query: 421 gctccaggtaaagaaagttgcagcaccccagaagc 455
|||||||||||||||||||||||||||||||||||
Sbjct: 35 gctccaggtaaagaaagttgcagcaccccagaagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
