BAC Information

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BAC

Clone NameMSMg01-396C18
Chromosome15 (Build37)
Map Location 19,249,499 - 19,250,029
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666839, Cdh10, EG666857
Downstream geneEG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396C18.T7 (MSMg01no396_c18.b1)MSMg01-396C18.TJ (MSMg01no396_c18.g1)
ACCAG496814AG496815
length752756
length of high quality
(start - end)
531 (37 - 567)242 (66 - 307)
definitionCHROMAT_FILE: MSMg01no396_c18.b1 PHD_FILE: MSMg01no396_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:14 2005CHROMAT_FILE: MSMg01no396_c18.g1 PHD_FILE: MSMg01no396_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCAC
CTATTCTTGTAGACACTTGCTATGCTAGGGTGGGGGATACCCAGCAGGTT
CCTGCCCTCTCAGAGGAGAATGGGAGGGGGCTAGGGGTAGAGATTCAGTA
AGGCTGAATCTGACCAGAAAGGGGAGCAGCATTTGGGAAATAAATAAATA
AATAGTCTTATGTTAACTACTCAATGTGTGAAATGTGTATGTGTTAAATT
TGCATATGTATGTGCATACATATGATTGCATATGGAGATTCTCAACCCTT
TAGATGCCATTGGGCTTTCTTCTCATTTCTCTTTCCTGAGTTCCTCTCAC
TAAAACCTGAGTTTGTCTGTTGAACAGTAAGAACTAGTCATGCCAAGCCA
TGGGAATATATTTTTTAACCAAACCAAAGGTTTTTTTGGTAAATACTGGC
TTTGAAACTTAACTTATGCTTGAGTACTGAAAGTTCTTGGCTGCTTGAGC
CTTTCAGCATTCATTTTCTCAGTCTATGATGAAGTTCTTATTATCCATAG
ACTGCTTTATTTGGAATAGAGCAGATTGGAATTCAGATGCTTAGCAGTCT
GCCTTGACCTCAAAAGCAGAGTGGGAGTTTTTTGAAACTGTTGGAAAAAA
TTACTAAAATGTATTTTTCCCAATTANAAAAAATGAAATGGTTTGAGTTT
CTCTTATAAGAATTGAAACTGGGAGTAAAAAAAAAATCATTGCTGACCCG
GG
GTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAGGGTATTAAGGCAGGAGTGGGTAGGTAGGTGGA
TGAACACCCTCATAGAAGCAGAGTAAGGGGGGATAGGATAGGGGTGTTGC
AGAGGGGAAACCGGGAAATGGGATAACATTTGAAATGTAAACAAATAAAA
TATCCAATTAAAAAAATAATTATAGCCGGGCGTGGTGGTGCATGCCTTTA
ATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCA
GCCTGGTCTTTTTTTGAATTCCAGGACACCAGGGCTATACAGAGAAAACC
TGTCTCGAACAACCAAAAAAAAAAAAAAATTAAAATAAATAAATAAAAAA
TTATACTCTCCAATAAACCTCCAAAGAGAACAAACATCAGGTAATCATGC
AGAAATATATATTCTTGTAACACGTTGTTAAAATTGGCATGCTAGCTGGC
ATGAACATCTGATACATAATAGAACCTCCCTTATATCTCGCTATACATTA
AGCACTATTGCCTTGCTCTTCGTTATGTTGTCCCTTTCCCTCATTCCTCT
GTTTATCCCACTTTTCTCAGTCTACACTTTCCCTCTTGCTTTCAACCTTG
TTTTTCTCCCCTTACACCCCTTTACCCCCCCCCCCCTTTTCCTAAAACAC
CTTTCCATCTCTTCTCCCCTTTTCCCCCCCCCACCCCATTTACTCTTTTT
CTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_c18.b1 MSMg01no396_c18.b1 CHROMAT_FILE:
MSMg01no396_c18.b1 PHD_FILE: MSMg01no396_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:14 2005
         (531 letters)



>mm_chr15_19249131_19250066
          Length = 936

 Score =  942 bits (487), Expect = 0.0
 Identities = 518/531 (97%), Gaps = 6/531 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcacctattcttgtagacacttgctatgctagggtgggggatacccagcaggttcc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 gaattcacctattcttgtagacacttgctatgctagggtgggggatacccagcaggttcc 840

                                                                       
Query: 67  tgccctctcagaggagaatgggagggggctagggg-tagagattcagtaaggctgaatct 125
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 839 tgccctttcagaggagaatgggagggggctaggggttagagattcagtaaggctgaatct 780

                                                                       
Query: 126 gaccagaaaggggagcagcatttgggaaataaataaataaatagtcttatgttaactact 185
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaccagaaaggggagcaacatttgggaaataaataaataaatagtcttatgttaactact 720

                                                                       
Query: 186 caatgtgtgaaatgtgtatgtgttaaatttgcatatgtatgtgcatacatatgattgcat 245
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 719 caatgtgtgaaatgtgtatgtgttaaatttgcatatgtatgtgcctacatatgattgcat 660

                                                                       
Query: 246 atggagattctcaaccctttagatgccattgggctttcttctcatttctctttcctgagt 305
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 659 atggagattctcaaccctttagatgccattgggatttcttctcatttctctttcctgagt 600

                                                                       
Query: 306 tcctctcactaaaacctgagtttgtctgttgaacagtaagaactagtcatgccaagccat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcctctcactaaaacctgagtttgtctgttgaacagtaagaactagtcatgccaagccat 540

                                                                       
Query: 366 gggaatatattttttaaccaaaccaaagg-----tttttttggtaaatactggctttgaa 420
           ||||||| ||| |||||||||||||||||     ||||||||||||||||||||||||||
Sbjct: 539 gggaatacattctttaaccaaaccaaagggtttttttttttggtaaatactggctttgaa 480

                                                                       
Query: 421 acttaacttatgcttgagtactgaaagttcttggctgcttgagcctttcagcattcattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 acttaacttatgcttgagtactgaaagttcttggctgcttgagcctttcagcattcattt 420

                                                              
Query: 481 tctcagtctatgatgaagttcttattatccatagactgctttatttggaat 531
           ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tctcagtttatgatgaagttcttattatccatagactgctttatttggaat 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 936
Length adjustment: 10
Effective length of query: 521
Effective length of database: 926
Effective search space:   482446
Effective search space used:   482446
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)