BAC Information

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BAC

Clone NameMSMg01-396L16
Chromosome15 (Build37)
Map Location 53,205,012 - 53,205,464
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039748, Thrap6, LOC100039745, Ext1
Downstream geneSamd12, EG665097, EG621631, Tnfrsf11b, LOC665280, EG383032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396L16.T7 (MSMg01no396_l16.b1)MSMg01-396L16.TJ (MSMg01no396_l16.g1)
ACCAG497235AG497236
length765759
length of high quality
(start - end)
452 (63 - 514)453 (68 - 520)
definitionCHROMAT_FILE: MSMg01no396_l16.b1 PHD_FILE: MSMg01no396_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:56 2005CHROMAT_FILE: MSMg01no396_l16.g1 PHD_FILE: MSMg01no396_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCCCC
CATCTATCTTGACATATCAAAAATTGTCATTTTCTGGGTCTTCTTTAGAC
AACCATATCATTAAGATTTTCTGAGTGCAGCTTCCCTATCATATAGAGAA
GATACTATTTCGCACCAGATGTCCCATCCTTATCCTCTGCCTCTTATAAT
CTTTCTGCCTAGTTTTTGACATATTTCCTGAGCCTTTGGCATAGAGATGT
ATCAGTTGGGGCTAGCCCATGGTTCTATGCATTTTGACCAGTTGTCATTT
TTCTGTAATGGTCTCTACTGCCAATTAATTAATTAATTAAAAGCTAGAAA
GAAAGCAACAAGCAAACAAACAAATAGAAAATTTAAAACCCCTTCTTTCC
TGAGGGATGAGCACTACATTTGTCTGTGGGTTTAAGCATAAATATTTAGA
AGTCAGTTATAATTGATATGGATTTGATGAAGGAACAGTGGAGGGTTCTC
TTCTAGAGCCCATGATATCACCAGCCATGGGTAGTGAGATGAGTCTACCA
TAACAAACATGAGTTCACTCCCATTGAGGCCCTATAGAAAGCTCATTGGT
TAATGTCCAGGTTGGGTTTGCCCCCTTTTGGACACCTCCCAGAAGGGGTG
GGGCACCGGTCGGAAACCCCCAAAAGGAATTGCCCCTCCCATCTGCGGGT
GGGGGGCGACAACCTGCAAGAGGGAATTTCTTTGTTCCCCTTTCCCAAAT
AAAAATCCCCTTGCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATAGAGTCACTTTGTTTTGTCTTATTTTTATA
CAGCAAGGACTCTACATGTAGCCTAGATTAACTCTTTGTTCTCCTGCCGC
AGCTTCCTAGGCGTTCGGATTATAAGAGTGCAACACTATGCTGGATATGC
TGCCCTGTATAGTAAATAGAGTGTTCTATTCTTAATTTATCTTTGCTATA
CATCGGGACTCCATTATTAGGATGCGAGCAGGAAGCAAAACCAGGTTTGG
ATAATCTTCTCCACTCACCCAAATCAGGGAGAGGAACAGTGCAGGGGTGC
TTAGGGTCAGGGCCCTAACTTGCTTCTAGCCTATCAATGGGGAAATTTCC
AGAAATCTGTGGAAAATAGCCTTAGCACGTTCCCAAAAGGAATAATTTTA
CAGCTCCAGCCAATCATAATAGGAAACAACACTTTCTCAGCTACATCATC
TATAGACACAGATAGCCTGTGGTCTCACAATTCCCTTTTTCTATGTTTTC
TTTGTTTTTCCTCTTTATTGAAAAAAGGTTTTTTTCCCCTCACATGATAT
CTCCATTCTCTTATTCCTCCCCATTCCCTCCTCCCTTTCCCCTTTTCTGT
TTTCTCATTAAAAAATCAAACCCTACTTTTCCAGGTGGTTTTTATTTAAA
CCTAACCCATAACCCCCCACTTTTTTTCTTCTCTAATAAGGGCCAATAAA
TAACTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_l16.g1 MSMg01no396_l16.g1 CHROMAT_FILE:
MSMg01no396_l16.g1 PHD_FILE: MSMg01no396_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:56 2005
         (453 letters)



>mm_chr15_53204812_53205664
          Length = 853

 Score =  876 bits (453), Expect = 0.0
 Identities = 453/453 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagagtcactttgttttgtcttatttttatacagcaaggactctacatgtagcctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagagtcactttgttttgtcttatttttatacagcaaggactctacatgtagcctaga 260

                                                                       
Query: 61  ttaactctttgttctcctgccgcagcttcctaggcgttcggattataagagtgcaacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaactctttgttctcctgccgcagcttcctaggcgttcggattataagagtgcaacact 320

                                                                       
Query: 121 atgctggatatgctgccctgtatagtaaatagagtgttctattcttaatttatctttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctggatatgctgccctgtatagtaaatagagtgttctattcttaatttatctttgct 380

                                                                       
Query: 181 atacatcgggactccattattaggatgcgagcaggaagcaaaaccaggtttggataatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacatcgggactccattattaggatgcgagcaggaagcaaaaccaggtttggataatct 440

                                                                       
Query: 241 tctccactcacccaaatcagggagaggaacagtgcaggggtgcttagggtcagggcccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctccactcacccaaatcagggagaggaacagtgcaggggtgcttagggtcagggcccta 500

                                                                       
Query: 301 acttgcttctagcctatcaatggggaaatttccagaaatctgtggaaaatagccttagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttgcttctagcctatcaatggggaaatttccagaaatctgtggaaaatagccttagca 560

                                                                       
Query: 361 cgttcccaaaaggaataattttacagctccagccaatcataataggaaacaacactttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgttcccaaaaggaataattttacagctccagccaatcataataggaaacaacactttct 620

                                            
Query: 421 cagctacatcatctatagacacagatagcctgt 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 cagctacatcatctatagacacagatagcctgt 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)