BAC Information

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BAC

Clone NameMSMg01-397D22
Chromosome15 (Build37)
Map Location 30,145,538 - 30,313,010
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397D22.T7 (MSMg01no397_d22.b1)MSMg01-397D22.TJ (MSMg01no397_d22.g1)
ACCAG497630AG497631
length807803
length of high quality
(start - end)		412 (41 - 452)359 (73 - 431)
definitionCHROMAT_FILE: MSMg01no397_d22.b1 PHD_FILE: MSMg01no397_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:36 2005CHROMAT_FILE: MSMg01no397_d22.g1 PHD_FILE: MSMg01no397_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,145,538 - 30,145,945)(30,312,656 - 30,313,010)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCTGCCCTTCGTTCTCACCAAATTGTCTCATGCTGATTGAAAAATAAAT
AGCTTGTTCTAGCCAGGTTTTTGAATATCAAGACAGTTTTTTGGGATTCC
TTTTCCCATCAGTACCTTTTAAACATATTGTGTTTACCAAAATCACAAAT
GGAACCCACATTGCCCAAGTGAAGACTTGGCAGCAACAGCAGGCCAAGCA
AATTCCAGAAACACAAACATGCCTGCAGCCTGATGGGGAGCCACAGGCAG
AAGACAGCACACGACAGCAGGACCTGGGTAGAGTTGGATTTCTGAACAGA
CTCTGTGGGAAGATGACCTCATAAAGCATGTGACTCCTGGCTGGAGGATG
GGTGAAGTAAGGTACCATCAAGTCCAACAGCGGCTGAGGGCACATACGGT
GATCACCTTGTTCCATTTTCTTCAGTCATGAAAAACTCACACTTCTCATG
GAGACCAGTTCTTTTTGCTGTCGCTGTGCCCCAAAGCCTGACAGAAAACA
ACTTTATAAAGGAAGGGATTTATAATTGTCGGGGATCCCAAAAAGGCCCA
TCCCCTATTTGGTGGGGGGAAAAACAGGACATGGGGAGGTGTCATATTTT
TCCCCTCCTCATCTCTTTCTTTTGTCGTTTTTCCACTCTATCCCCTCTCC
CCCCCCTTTTCTTTCTCCTCTCTTTTATCTCCCCCCCTTTTTCTCCTTTT
CCTTTTCTTTCTTTCCCCACGCTTTTTCCTCTATTCTCCTTTTCCTCCCC
CCTCTCT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACACTTCAAAAGGAGAGAAAGTGACTT
CCAGGATCTGATAAGGGGCGAGGGAGCCTGCTTTTAAGGGAGGCCAAACC
TCTTCCAAGTGAGGGAGCCAGGAAGTCTGGGGTCCAGTGTAGAGAGCAGG
AAGTTTAGACAGTTCTCACAAGGGATGCCTTTCTTATCTAAGGAGTAATA
GAAAGGACCTAACGTGTCTATGCAAGATTTTTACTGCCTGCATTTATTTT
ATGTAACTATTGGTGTATTGATCTACGCACAGATATAATCTTGGCACTGG
CATGACCACAAAAAGATCTGAATGTCACTGTTTTAGAAATACATGTTGGT
GGCTCTCANAGGTTTTCTAAAAAAAAAATGTTTTAATGTTGTACTCAGAC
TAATACAGCAGAAAGCAAGATTCCCCCTTTGAGGGTCATAGAGTGGATAA
TAAGAGAAATTATTGATTAGACTCCTTAAGAAGCTCCCGGGATAATTATT
TCGGTTTTTAAGAGAAGAAATCCACAACCAAAAATTAATTTCTTGCGGAG
CGGGGGTTTCTCCAATATTTATTAGCGCGCCCCCCCCTAATTGGGGCCGA
AAAAAGGAAACCGCGTTTTCTTCTCTCTCTTTTGTAAACAAGGTGCGGGT
TTCTATCCCTTACCGGCGGGTGCTTTTATATCCTTGGGTGTTCGGGTCTG
ATTTCTTAAATAAATATCACTCCTCTACTCGCCTTTCTTTTCTCCCCCCC
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_d22.b1 MSMg01no397_d22.b1 CHROMAT_FILE:
MSMg01no397_d22.b1 PHD_FILE: MSMg01no397_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:36 2005
         (412 letters)



>mm_chr15_30145334_30146145
          Length = 812

 Score =  727 bits (376), Expect = 0.0
 Identities = 400/408 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagctgcccttcgttctcaccaaattgtctcatgctgattgaaaaataaatagct 64
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagctgccctttgtcctcaccaaattgtctcatgctgattgaaaaataaatagct 264

                                                                       
Query: 65  tgttctagccaggtttttgaatatcaagacagttttttgggattccttttcccatcagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttctagccaggtttttgaatatcaagacagttttttgggattccttttcccatcagta 324

                                                                       
Query: 125 ccttttaaacatattgtgtttaccaaaatcacaaatggaacccacattgcccaagtgaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttttaaacatattgtgtttaccaaaatcacaaatggaacccacattgcccaagtgaag 384

                                                                       
Query: 185 acttggcagcaacagcaggccaagcaaattccagaaacacaaacatgcctgcagcctgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acttggcagcaacagcaggccaagcaaattccagaaacacaaacatgcctgcagcctgat 444

                                                                       
Query: 245 ggggagccacaggcagaagacagcacacgacagcaggacctgggtagagttggatttctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggggagccacaggcagaagacagcacacgacagcaggacctgggtagagttggatttctg 504

                                                                       
Query: 305 aacagactctgtgggaagatgacctcataaagcatgtgactcctggctggaggatgggtg 364
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 505 aacagactctgtgggaagatgacctcataaagcatgtgactcttggctggaggatgcgtg 564

                                                           
Query: 365 aagtaaggtaccatcaagtccaacagcggctgagggcacatacggtga 412
           ||||||| ||||| |||||||||||| | |||||||||||||||||||
Sbjct: 565 aagtaagttaccagcaagtccaacagtgactgagggcacatacggtga 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no397_d22.g1 MSMg01no397_d22.g1 CHROMAT_FILE:
MSMg01no397_d22.g1 PHD_FILE: MSMg01no397_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:37 2005
         (359 letters)



>mm_chr15_30312456_30313214
          Length = 759

 Score =  642 bits (332), Expect = 0.0
 Identities = 349/355 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacttcaaaaggagagaaagtgacttccaggatctgataaggggcgagggagcctgct 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 555 cacacttcaaaaggagagaaagtgacttccaggatctgataaggagcgagggagcctgct 496

                                                                       
Query: 61  tttaagggaggccaaacctcttccaagtgagggagccaggaagtctggggtccagtgtag 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 495 tttaagggaggccaaacctcttccaagagagggagccaggaagtctggggtccagtgtag 436

                                                                       
Query: 121 agagcaggaagtttagacagttctcacaagggatgcctttcttatctaaggagtaataga 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 435 agagcaggaagtttagacagttctcacaacggatgcctttcttatctaaggagtaataga 376

                                                                       
Query: 181 aaggacctaacgtgtctatgcaagatttttactgcctgcatttattttatgtaactattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaggacctaacgtgtctatgcaagatttttactgcctgcatttattttatgtaactattg 316

                                                                       
Query: 241 gtgtattgatctacgcacagatataatcttggcactggcatgaccacaaaaagatctgaa 300
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 315 gtgtattgatctacacacagatataattttggcactggcatgaccacaaaaagatctgaa 256

                                                                  
Query: 301 tgtcactgttttagaaatacatgttggtggctctcanaggttttctaaaaaaaaa 355
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 255 tgtcactgttttagaaatacatgttggtggctctcaaaggttttctaaaaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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