BAC Information

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BAC

Clone NameMSMg01-397E07
Chromosome15 (Build37)
Map Location 86,496,282 - 86,680,997
singlet/doubletdoublet
Overlap genenone
Upstream genePpara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
Downstream geneLOC100042309, AW049604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397E07.T7 (MSMg01no397_e07.b1)MSMg01-397E07.TJ (MSMg01no397_e07.g1)
ACCAG497648AG497649
length760768
length of high quality
(start - end)		289 (48 - 336)358 (78 - 435)
definitionCHROMAT_FILE: MSMg01no397_e07.b1 PHD_FILE: MSMg01no397_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:39 2005CHROMAT_FILE: MSMg01no397_e07.g1 PHD_FILE: MSMg01no397_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,496,282 - 86,496,551)(86,680,640 - 86,680,997)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGAATTTCCCAAAATAAAGCAAAAGCAAAACCCAAACCCAAA
CCCAAAACAACCAATAACAACAACAAAATTGCATGAGAACCAGCTTGGGG
TTTTAAATCATTATGGGAGGGTTTTTTTGTTTGTTTGTTTCTTTTGCTTT
TTATTTTTGATTTTTGTTTGTTTTTATTTTGTTTTCTGTGCTTGGCAACT
TGTTGTTAAGTCTGAGGAGATGAATGACTTTATTACACTTCTTCCTTAAG
TCAGCCACATACTGAGGGCTTTTTTTTTGAAGCCCAGCTCTTGCAGCATT
GTCCTAGGACAGGTTCTTTGCAGTATCTATGCCTTATCATCTGTGCTCAG
GTCTGGGTTTGTCTCCTCCCCACCGTCTAGGCCTTCGATAGTTGGCCGAC
TGCCCGATTCTTTTTTAGATGTCCTCCGCCCTTCCCCCATTGTTCTTTCC
CCTTTCGCATTGCTCCTTGCCTTTTCCTTTTTTTGTNATCCTCCTTCACA
TTTTTTTGTTTTTTATCATCTTAATTTATTTTCTTCCTTCCCCACTCTTT
CTTCCCTTCTTCCTCCTCCTCCTGTTCCACTTTCTCTTTCTTTCTCTCTC
CTTCTCCTGTTTCGTCTTCTTTCTTCCCCCTTCGTTTTTTTCGCCTTCTT
CTTTCTTCTCCCCTTTTCCCCCTCCCTCCCTTCTTCTTTTTCTCTTCCTC
CTCTCATATC

CGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAACCATAGTATGGTTTCAT
TAGGAGAAAACCTCACCAGGCAATCAGAGTCAATTCCTTCATATTGATTT
ATCAGGGGTAGTTTAGAGTCACCTGCTGCTTGGCATTGTGAAGAGGGATC
CCAATGCAAGTTAATCACTTTTTGTTATTAAACCATGCTTTAGAGCATCC
AGGGACAGCCCAGAAGCCAGATCATCCTGAGCCTTGCTGGAGCGTTCCCG
GAGCTGACTTGTATCAGCTCATTTCCCTTTATGAGACTACAGTTGAAGCC
TTTAACTACACAAGGGTTGGCTCTCTCAGAAACATCTCCCAGGGAGCCAA
AGCAGGTTCATGGAGGATGTAGCACAACTCTTGGCAGAGCGTAATGATAT
GATTCCTTGTGCCCCATGCTGGTTTTGTCATTCAGCACAGTCATTTCTAG
ACCCCACCTTACTCCCTATCCTCACCCTCATTTTTTGTGCCCTGTATTGA
ACAACTCCTCCTTTAGGGGTTATAAAAACCCCCCCTATCTCTGCTGGTGG
TTTCTTCTTATTTCATTTGGCTTCAAACACCGTTTCTTTCCACATCCCGC
CCCCCTTTCTTTCCTTCTTTTTTTATCGCAATTGTCTTTCCCTACCTTTG
TTTTCTTTTCCCCCCCCCCCGTTCCATTGCTTTTTTTCTCCCCTTCCTTT
TTTCTTTTATTTCTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_e07.b1 MSMg01no397_e07.b1 CHROMAT_FILE:
MSMg01no397_e07.b1 PHD_FILE: MSMg01no397_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:39 2005
         (289 letters)



>mm_chr15_86496063_86496751
          Length = 689

 Score =  460 bits (238), Expect = e-134
 Identities = 262/270 (97%)
 Strand = Plus / Plus

                                                                       
Query: 20  ccaaaataaagcaaaagcaaaacccaaacccaaacccaaaacaaccaataacaacaacaa 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ccaaaataaagcaaaagcaaaacccaaacccaaacccaaaacaaccaataacaacaacaa 279

                                                                       
Query: 80  aattgcatgagaaccagcttggggttttaaatcattatgggagggtttttttgtttgttt 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aattgcatgagaaccagcttggggttttaaatcattatgggagggtttttttgtttgttt 339

                                                                       
Query: 140 gtttcttttgctttttatttttgatttttgtttgtttttattttgttttctgtgcttggc 199
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtttcttttgctttttgtttttgatttttgtttgtttttattttgttttctgtgcttggc 399

                                                                       
Query: 200 aacttgttgttaagtctgaggagatgaatgactttattacacttcttccttaagtcagcc 259
           ||||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aacttggcggcaagtctgaggagatgaatgactttattacacttcttccttaagtcagcc 459

                                         
Query: 260 acatactgagggctttttttttgaagccca 289
           |||||||||||||||  | |||||||||||
Sbjct: 460 acatactgagggcttgctctttgaagccca 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no397_e07.g1 MSMg01no397_e07.g1 CHROMAT_FILE:
MSMg01no397_e07.g1 PHD_FILE: MSMg01no397_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:39 2005
         (358 letters)



>mm_chr15_86680440_86681197
          Length = 758

 Score =  669 bits (346), Expect = 0.0
 Identities = 355/358 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctaaccatagtatggtttcattaggagaaaacctcaccaggcaatcagagtcaattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctctaaccatagtatggtttcattaggagaaaacctcaccaggcaatcagagtcaattcc 499

                                                                       
Query: 61  ttcatattgatttatcaggggtagtttagagtcacctgctgcttggcattgtgaagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttcatattgatttatcaggggtagtttagagtcacctgctgcttggcattgtgaagaggg 439

                                                                       
Query: 121 atcccaatgcaagttaatcactttttgttattaaaccatgctttagagcatccagggaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atcccaatgcaagttaatcactttttgttattaaaccatgctttagagcatccagggaca 379

                                                                       
Query: 181 gcccagaagccagatcatcctgagccttgctggagcgttcccggagctgacttgtatcag 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcccagaagccagatcatcttgagccttgctggagcgttcccggagctgacttgtatcag 319

                                                                       
Query: 241 ctcatttccctttatgagactacagttgaagcctttaactacacaagggttggctctctc 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 318 ctcatttccctttatgagactacagttgaagcctttaactgcacaagggttggctctctc 259

                                                                     
Query: 301 agaaacatctcccagggagccaaagcaggttcatggaggatgtagcacaactcttggc 358
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 258 agaaacatctcccagggagccaaagcaggttcatggaggacgtagcacaactcttggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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