BAC Information

Click to search

BAC

Clone NameMSMg01-397N15
Chromosome15 (Build37)
Map Location 99,819,563 - 99,998,194
singlet/doubletdoublet
Overlap geneD330037H05Rik, 4930478M13Rik, Dip2b
Upstream geneEG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920
Downstream geneAtf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397N15.T7 (MSMg01no397_n15.b1)MSMg01-397N15.TJ (MSMg01no397_n15.g1)
ACCAG498094AG498095
length795782
length of high quality
(start - end)
241 (71 - 311)239 (67 - 305)
definitionCHROMAT_FILE: MSMg01no397_n15.b1 PHD_FILE: MSMg01no397_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:25 2005CHROMAT_FILE: MSMg01no397_n15.g1 PHD_FILE: MSMg01no397_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,997,954 - 99,998,194)(99,819,563 - 99,819,800)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGACCATCCGCGGAATTCA
GAAACTTACATAAACCCTGACAAACCATCACAATGGGCTTAATTTTACAG
GCTGAATAGGAACATTTAAGGCTTTGCACTCGGACCTCAAACTCTGGTCA
AATAAAGCCAAGACTGGAGGACACTGAAGCAAGTATCAAAGACCTCAAAG
TTCAGTCACTCATCAACGTGACGAGACACGAGCTGTGTGGACAGAAGCAT
AACACCAAATACAGTCACTCTGCAGTATCTGTGGGGGTCAGTCCCAGACG
CGACTCATGCTCTCTTTCTTACACAGAATGATGGCGTGTTTGTCTGCATC
TTTAGATTGCCTATGAAACCTACCGCTCTGCTGATGTCGTGTGAACACTG
CTAGGCTGCACTGAGCTCAAGCCTTGAATGATACGGAATGCTAGCTCCAT
GGCGAAGATAGCTCTGCAAAGCTAGTGTGCAAGATGTGCCCTTCCCATGC
TGGGTTTGCAACTTCACGTCCTAACTCCTGCCTCCCTTATTATCACCCTG
TCTTGCCCTTTTTTTTCATCTTCCCCAATTCTTTCCCTTCTATCCTTTTG
TCCCCCTCTTTCTCCTCCCCCCGTCTCCCCCGTTTTTTCCTTCTCCCTTC
TTTTCTCTCCTCTTTTTTCCTCCCTCCCCTTCCCATACTCCACCCCCTTT
TTTTCCTCCTCCTGGTATTATGTATCTTTTTCCTCCCTCCCCCTTACCAC
TTCCCTTTCTCTCTCTTATCCCCTTCTCCTTCTCTTCTTCCTTCC
TGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTAGGTGTTCATTTACTTTTGACAATTATTATTT
AAAGCAGTTTGATACTAGTTGATAAGTATAGGGATGCTATAAGATTACAG
CTTTTTAATTGTTCAATTGATTATGGCTGATTTGCAAGTTATTAAGTAAT
ATTTATTATAGTGTTATTAATTTGTCTTTTTATGATGAAGAATTTATCTA
TTATTACCCTTTCCCGAAGAAATAAATTGTCACCTTTTAGTTTTATAAAC
TAAACAGAATTTTTACCTTCTTTTTTCTTTAAGATTTATTTATTATTATA
TGTAAGCACACTGTAGCTGTCTTTAGCCACCCCAGAAGAGGGTGTCAGAT
CTCATCACCCATGTTTGTGATGTCCCACGTGCTTCCTGCCTTTTGTACAC
CCTCACCTTCTTACCAAATCCCCTTTGTTCTTTTTCCACCATCCTCTCCT
TTTTCCTTTCCCGTCACCTCCCCCTCTTCTTTTCTCCTCCTTTTCCCCCT
TTTTCCCACCCTCCCTTTCCCCCCTTTTCCTCCTTCTCGCCCTCCCCCCA
GCCCTCTTCCCCTCCCCCTTCCCTCCCTTTTCCCTTCTTCTCGCTCAATT
CCTTCTCCTCTATTTTTTTTTATTCAGCTCCCAACTCCCTTCCCCTTCTT
CCTCCTTTTCCATTCCTTCCTTCTTATTCCCTTTTCTCGCCCCCTCTCCC
CCTCCTCTTTTCTTTATCCCCCCTCCCCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_n15.b1 MSMg01no397_n15.b1 CHROMAT_FILE:
MSMg01no397_n15.b1 PHD_FILE: MSMg01no397_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:25 2005
         (241 letters)



>mm_chr15_99997754_99998394
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaccatcacaatgggcttaattttacaggctgaataggaacatttaaggctttgcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaccatcacaatgggcttaattttacaggctgaataggaacatttaaggctttgcact 382

                                                                       
Query: 61  cggacctcaaactctggtcaaataaagccaagactggaggacactgaagcaagtatcaaa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cggacctcaaactctggtcaaataaagccaagactggagaacactgaagcaagtatcaaa 322

                                                                       
Query: 121 gacctcaaagttcagtcactcatcaacgtgacgagacacgagctgtgtggacagaagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctcaaagttcagtcactcatcaacgtgacgagacacgagctgtgtggacagaagcat 262

                                                                       
Query: 181 aacaccaaatacagtcactctgcagtatctgtgggggtcagtcccagacgcgactcatgc 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaccaaatacagccactctgcagtatctgtgggggtcagtcccagacgcgactcatgc 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no397_n15.g1 MSMg01no397_n15.g1 CHROMAT_FILE:
MSMg01no397_n15.g1 PHD_FILE: MSMg01no397_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:25 2005
         (239 letters)



>mm_chr15_99819363_99820001
          Length = 639

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggtgttcatttacttttgacaattattatttaaagcagtttgatactagttgataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggtgttcatttacttttgacaattattatttaaagcagtttgatactagttgataag 260

                                                                       
Query: 61  tatagggatgctataagattacagctttttaattgttcaattgattatggctgatttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagggatgctataagattacagctttttaattgttcaattgattatggctgatttgca 320

                                                                       
Query: 121 agttattaagtaatatttattatagtgttattaatttgtctttttatgatgaagaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 321 agttattaagtaatatttattatagtgttattaatttgtctttttatgatgaagaacaga 380

                                                                     
Query: 181 tctattattaccctttcccgaagaaataaattgtcaccttttagttttataaactaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctattattaccctttcccgaagaaataaattgtcaccttttagttttataaactaaa 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)