Query= MSMg01no397_p12.b1 MSMg01no397_p12.b1 CHROMAT_FILE:
MSMg01no397_p12.b1 PHD_FILE: MSMg01no397_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:34 2005
(481 letters)
>mm_chr15_92297528_92298407
Length = 880
Score = 752 bits (389), Expect = 0.0
Identities = 456/491 (92%), Gaps = 24/491 (4%)
Strand = Plus / Plus
Query: 4 gaattctctctcttac----agatactcacttttagttacggggtttcttttgctcttta 59
|||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 gaattctctctc---ccaaaagatactcacttttagttacagggtttcttttgctcttta 257
Query: 60 ttctacactatcgatctaagtgcagtttccagtgttcagaccattttgaattatattttg 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 258 ttctacactatcgatctaagtgcagtttccagtgttcagaccattttgacttatattttg 317
Query: 120 aagagaattgtagccagaggagtttttacaaaagaagatggaaggaaggaaaggattgaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagagaattgtagccagaggagtttttacaaaagaagatggaaggaaggaaaggattgaa 377
Query: 180 gatgtaacaggctcccaagccacggttccctgcagtgcacccacagaaacttaggcttcc 239
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct: 378 gatgtaacaggctccgaagccacggttccctgcagtgcactcacagaaacttagactttc 437
Query: 240 tttccattgctacagaagcagcttcctaatcctcttttttta---------aaatctctt 290
||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct: 438 tttccattgctacagaatcagcttcctaatcctc-------acagaaaaaaaaatctctt 490
Query: 291 ccattcatgtgactggagcagcacagattgtctaaacactttctttatagagttagctct 350
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 491 ccattcatgtgactggagcagcacagattgtctaaacacttcctttatagagttagctct 550
Query: 351 tttattcagtcagtatcagcaccttggcaaaataatttttgtagcatttttataattctt 410
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 551 tttattcagtcagtatcagcaccttggcaaaataattttt-tagcatttttataattctc 609
Query: 411 atttcatcagttgttcattatatattctttccaactctataatggtgacactggctgggg 470
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atttcatcagttgttcattttatattctttccaactctataatggtgacactggctggga 669
Query: 471 cttttcagttc 481
|||||||||||
Sbjct: 670 cttttcagttc 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space: 409770
Effective search space used: 409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_p12.g1 MSMg01no397_p12.g1 CHROMAT_FILE:
MSMg01no397_p12.g1 PHD_FILE: MSMg01no397_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:34 2005
(247 letters)
>mm_chr15_92481035_92481680
Length = 646
Score = 429 bits (222), Expect = e-125
Identities = 241/248 (97%), Gaps = 3/248 (1%)
Strand = Plus / Minus
Query: 1 agagtgcatttctttttaaaaactgattaacggctcaaataggcagattaatggaccaag 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 446 agagtgcatttctttttaaaaactgatcaacggctcaaataggcagattaatggaccaaa 387
Query: 61 accatcaaatgaagccctaagcaatagttacaaattgaatt-aaaaaaaaaaaactgtgt 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 386 accatcaaatgaagccctaagcaatagttacaaattgaattaaaaaaaaaaaaactgtgt 327
Query: 120 gagaaaaaaaaatctaaaaatatgaagaaaaatttaagaagcaactagaaatgttgaaaa 179
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gag--aaaaaaatctaaaaatatgaagaaaaatttaagaagcaactagaaatgttgaaaa 269
Query: 180 agtaccacatgtaagttatagaaatgtcacaaataataaatcaaattaaaaacacagtag 239
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 268 agtaccaaatgtaagttatagagatgtcacaaataataaatcaaattaaaaacacagtag 209
Query: 240 caaagcat 247
||||||||
Sbjct: 208 caaagcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space: 151606
Effective search space used: 151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
