BAC Information

Click to search

BAC

Clone NameMSMg01-398A17
Chromosome15 (Build37)
Map Location 56,554,635 - 56,554,955
singlet/doubletsinglet
Overlap genenone
Upstream geneSntb1, LOC665348, LOC100039908, Hba-ps3, Has2, EG594843
Downstream geneLOC435442, LOC100040067, LOC100039984, BC026439, Zhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398A17.T7 (MSMg01no398_a17.b1)MSMg01-398A17.TJ (MSMg01no398_a17.g1)
ACCAG498241AG498242
length752747
length of high quality
(start - end)
624 (48 - 671)324 (80 - 403)
definitionCHROMAT_FILE: MSMg01no398_a17.b1 PHD_FILE: MSMg01no398_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:40 2005CHROMAT_FILE: MSMg01no398_a17.g1 PHD_FILE: MSMg01no398_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTCCTTTGGGCAAAGAGGTGACTGTAAAGGAAATACAACAGA
CTGAAATGGAGACAGAGAGAGCAAAAGAAAAAAATTACTTTTGTGCTGAC
TAGTTTTATGTCAATTTGACACAGCCTAGAGGAAAGCAGGAAACCTCAAT
GGAGAAAATGTCTACATAAGATCCAGTTGTGTCTTTGTAACTAGTGACTG
ATTGGGCAGAACCCAGCCCATGGTGTGGATCAATCCCTGGAATGGTGGTT
TTCAGTTCTGGAAATACAGGAACAAAAAGTGGAGCAGAGACTGAAGGTAA
GGCCATCCAGAGACTTTCCCACCTAGGAATCCATCACATCTGCAGACACC
AAACTCAGAAACTATTGCTGATGCCAAGAAGTGCTTGCTGACAGGAGCTT
GGTAAGTTGTCCCCTGAGAGATTCTACTAGAGCCTGGCCAATGCAAATTT
GGATGCACACAGGCAAAAATCACACTGAGTACAGGGACCCCAGTGGAGAA
GTTGGGGCAAGGACTGAAGGAGCTGAAGAGGTTTGCAACCCCATAGGAAT
AACAACAATATCAAACAACCAGACAATGCCCCCCCCCTGCCCTAAAACTC
CCAGGGACTAGGAACTAAACTACCAACCAAAGATTATACATGGAGGGACC
CATGTGGATATGTAGCAGAAGACTGCCTTATTGGGCATCACTGGGAGGGG
AG
NNNCCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGAAAGCAGAATGGTGA
ACAGGTCATGAAAGATAAGCTTCTAGATTGGGAAGGTCTTATGGTCAAAA
TATTAATCAAATGAAGAGTTTGGTTTGGTTTGGTTTTGTGGCTCTATGGG
TTGAACTAAGAACTTGGGGCCTGCTCAGCAAGCACTGTACCACTGAGATG
CATCTGAATGGAGATTTGCAGTGTACACTGAACTACACATACACAAAAGA
AGGCTAAGGACATGGAAAAATAATTTACCATACAAACAATTGCTTAGTGT
CATTAAATAGGAAGTTTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
ATATNNNANNANNTCTAAACCACTGTTTTTTCTCTAATAAAGATAAACAG
CCTGAACAAGAATCTAGGGAAACAATACCCTTCATAATAGTCACAAATAA
CATTACATACCGTATTGTGACTTCTTCTAATGAAGTATAAGATTTCTATG
TATAGATCTTTCTCGTCTTTGAATTATGTACTTCCTTATCACCTCTTAAC
ATGTTTTGATCTCCCCCTACTTCTGGATGGGCCGATTAATAAATCCTATT
CTGTTTTCCTCTGTCCCCCGCATTCCCTGGATTTTATGGCTTCTCCTATC
TTACTTCTCTTCAGCTTCTTCCTTTAGTTTTATTTGCCCCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_a17.g1 MSMg01no398_a17.g1 CHROMAT_FILE:
MSMg01no398_a17.g1 PHD_FILE: MSMg01no398_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:40 2005
         (324 letters)



>mm_chr15_56554435_56555158
          Length = 724

 Score =  574 bits (297), Expect = e-168
 Identities = 315/321 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgaaagcagaatggtgaacaggtcatgaaagataagcttctagattgggaaggtct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 actatgaaagcagaatggtgaacaggtcatgaaagataagcttctatattgggaaggtct 260

                                                                       
Query: 61  tatggtcaaaatattaatcaaatgaagagtttggtttggtttggttttgtggctctatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatggtcaaaatattaatcaaatgaagagtttggtttggtttggttttgtggctctatgg 320

                                                                       
Query: 121 gttgaactaagaacttggggcctgctcagcaagcactgtaccactgagatgcatctgaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gttgaactaagaacttggggcctgctcagcaagcactgtaccactgagctgcatctgaat 380

                                                                       
Query: 181 ggagatttgcagtgtacactgaactacacatacacaaaagaaggctaaggacatggaaaa 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ggagatttgcagtgtacactgaactatacatacacaaaagaaggctaaggacatggaaaa 440

                                                                       
Query: 241 ataatttaccatacaaacaattgcttagtgtcattaaataggaagtttggagtgtgtgtg 300
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagaaaccatacaaacaattgcttagtgtcattaaataggaagtttggagtgtgtgtg 500

                                
Query: 301 tgtgtgtgtgtgtgtgtgtgt 321
           |||||||||||||||||||||
Sbjct: 501 tgtgtgtgtgtgtgtgtgtgt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)