Query= MSMg01no398_n21.b1 MSMg01no398_n21.b1 CHROMAT_FILE:
MSMg01no398_n21.b1 PHD_FILE: MSMg01no398_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:44 2005
(551 letters)
>mm_chr15_75708613_75709564
Length = 952
Score = 977 bits (505), Expect = 0.0
Identities = 526/533 (98%), Gaps = 1/533 (0%)
Strand = Plus / Minus
Query: 20 tttttttttttttaatttattttatgtgagtacactgtagctgttttcagatacaccaga 79
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 929 tttttttttttttaatttattttatatgagtacactgtagctgttttcagacacaccaga 870
Query: 80 agaggtcatcagatctcattacagatggttatgagccaccatgtggttgctgggaattga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 agaggtcatcagatctcattacagatggttatgagccaccatgtggttgctgggaattga 810
Query: 140 actcaacctctggaagagcagccaatgttcttaacccccgaaccttctttccagccctaa 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 actcaacctctggaagagcagccaatgttcttaacccccgaaccttctttccagccctaa 750
Query: 200 ctcaagggattcttagcagtgctgaacgaatgacagtactggatcctcctctctagtact 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ctcaagggattcttagcagtgctgaacgaatgacagtactggatcctcctctctagtact 690
Query: 260 gagccactgtaagaagaccatagaccaacggaggacaaggagcacccagcagtacacact 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gagccactgtaagaagaccatagaccaacggaggacaaggagcacccagcagtacacact 630
Query: 320 taatttgtagtaaaactttcaaaaacattattagggggaaagacagcacctttaacaaat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taatttgtagtaaaactttcaaaaacattattagggggaaagacagcacctttaacaaat 570
Query: 380 ggttaacaaaaacctcttcaaaatgagtcaaggaccataatgtaagggttgaagttttga 439
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 569 ggttagcaaaaacctcttcaaaatgaatcaaggaccataatgtaagggttgaagttttga 510
Query: 440 aa-tctgagacgaagacactctaagacgcaggcagagacaagaattttctgaacaggact 498
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 509 aagtctgagacgaagacactctaagatgcaggcagagacaagaattttctgaacaggact 450
Query: 499 cccacagcacaggggacaaccccaaggcttgctaataggatcatatgcggtta 551
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 449 cccacagcacaggggacaaccccaaggcttgctaataggattatatgcggtta 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space: 509622
Effective search space used: 509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_n21.g1 MSMg01no398_n21.g1 CHROMAT_FILE:
MSMg01no398_n21.g1 PHD_FILE: MSMg01no398_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:44 2005
(445 letters)
>mm_chr15_75589504_75590348
Length = 845
Score = 837 bits (433), Expect = 0.0
Identities = 442/445 (99%)
Strand = Plus / Plus
Query: 1 tattctccattgataacatgctaattttttgatacattgagtgaaaaataatgtttattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattctccattgataacatgctaattttttgatacattgagtgaaaaataatgtttattt 260
Query: 61 gtttccctccacattttcttttttacacatgtgtgcttttccctgaaagtgttaacctgg 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gtttccctccacattttcttttttacacatgtgtgtttttccctgaaagtgttaacctgg 320
Query: 121 tctaatacccttgaaaaactcccaaaatgctaggaaaagtgaagaccttccttagaccat 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tctaatacccttgaaaaactcccaaaatgctgggaaaagtgaagaccttccttagaccat 380
Query: 181 gcacgagctatgatgagaaagcatgatgagaaaaaactcctaggtagcagagacagggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacgagctatgatgagaaagcatgatgagaaaaaactcctaggtagcagagacagggac 440
Query: 241 caccttactcgcaaggcttcaaaggcctggccagcaatctaaacaaggacctggagttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccttactcgcaaggcttcaaaggcctggccagcaatctaaacaaggacctggagttta 500
Query: 301 ggctctcactctatataagcagaaaaggaaccaaagaaatgtgaaggaaagaagcaaggc 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctctcactttatataagcagaaaaggaaccaaagaaatgtgaaggaaagaagcaaggc 560
Query: 361 acagcagggagtaaagccagggcactccaacggtgctgctcctcgtaactagtaacacga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagcagggagtaaagccagggcactccaacggtgctgctcctcgtaactagtaacacga 620
Query: 421 ggacagaagcaatgcttgcacagga 445
|||||||||||||||||||||||||
Sbjct: 621 ggacagaagcaatgcttgcacagga 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
