BAC Information

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BAC

Clone NameMSMg01-399G23
Chromosome15 (Build37)
Map Location 9,355,674 - 9,355,775
singlet/doubletsinglet
Overlap geneLOC383094
Upstream geneNipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2
Downstream geneCapsl, Il7r, C230086A09Rik, Prlr, Agxt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399G23.T7 (MSMg01no399_g23.b1)MSMg01-399G23.TJ (MSMg01no399_g23.g1)
ACCAG499299AG499300
length723748
length of high quality
(start - end)
181 (75 - 255)102 (106 - 207)
definitionCHROMAT_FILE: MSMg01no399_g23.b1 PHD_FILE: MSMg01no399_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:27 2005CHROMAT_FILE: MSMg01no399_g23.g1 PHD_FILE: MSMg01no399_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCGACCGCGGCGGA
ATTCTCATTATTTCCCAAATATCGCTCAAAGAGGCCCCATATATGTAGAC
ACAAACTAGAAAATTATTCTTACGTGTCCGCCTGGCTTGGGAGGCGGCCT
CAGCCTCAGCAGCAGCGGTCGCCATCTGGGTTCCTGGACTCCGCGGGACC
TAGGAAAATAGTCTGAACACGTTAGAGAGTGCGCCAGAGAACCGGACAGC
TTCTGGGACAGGCGGAAGCACAGAGCCGCTGAGGCAGTACCCTTTGCAGG
TTGCCCACAGCCGGCCTTTTTTTTTATCAGAGGACTAGTGTCCGCCTGGC
TCGTGAGGCAGATTCTGCCTCACGAGCAGCGGTTGTCATCTTGGTTCCAG
GACTCCCTGTAACTTACCACCTTATCCTGTATATCCGAGAGTCTGTTCCA
CTGAAGCTGACAGCTTCTGGGATCTGCCCACAGCATTCAGTTTCTGAGAG
AGGCCCTGTTTTGGCCCTTCTTTCTCTACCATGTATAGGTCCAATCTTTA
TACCCTTGCGCTTCTTCCCTGTATGATAGCTTGCCTGTATACACCCGGCT
GACCTCTGATACTCTGACGACAGATTCCCGCCCCCAGTGCTTGCCGTACC
CTCTTCTCCACATCTCACAATATCCCCCTCTACCCCGATTCTCCTATACC
CACCTATTCCACATTTATCCTAT
CATTGTACCGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTATAATCCATCTTGCAGAAACCTT
GTATAATAGTGTATTTCACATCTCTATCAGAATAGATTATCTCCTATATT
TTATTTTATCTTCTCTGATAATTTAAAGAATGATTCTTTCACTGTACTTT
TTCAGGTTCAGAGTCAAATAATCATTTTTAACTGTTTTCTTTCTGCATTT
TTATATACAAAGATGCTTATTACCCTAAAATTCACTAAAAGATCTATGTA
TTTCCTTTTTTTGTAAATTTATCCTTCCACTTACTTTACTTTTCTGCCAC
TGTCCCCTCCTATTTCCCCCTTCTCTTAACTCTTCTCCCACCCTGCTCCC
CTTATCCTCTAAGCTGGTGCTTATCTTGTTCATGTCTCCCTTTTGCTCCT
TTCTGTTTTTGAGACATTAGCTACTGAAGGATTGGCTTATTCTTCATGAA
AGACTTTGCCTATTGACACTATCTCTCTTCCCATCTCCAGATTTTCTATC
CGCCCCTGACTCTCCTTTTCTTTTACATACTTACACACCTTTTCATACAC
CACGTTTATTTGTTATATCGCCGTCTGTTTTTTTTGTATTTTTCCTTTTT
GCCCTTCTTTCCTCCTCTTTTTACCCCCCTTTTCTTTTTTTTCTTTTTAT
CCTTTTCGTTCCCGCCGTTTTTCCCCTTATTTCTCCCCCCCCACTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_g23.g1 MSMg01no399_g23.g1 CHROMAT_FILE:
MSMg01no399_g23.g1 PHD_FILE: MSMg01no399_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:27 2005
         (102 letters)



>mm_chr15_9355474_9355975
          Length = 502

 Score =  174 bits (90), Expect = 1e-48
 Identities = 99/102 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtgtatttcacatctctatcagaatagattatctcctatattttattttatcttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atagtgtatttcacatctctatcagaatagattatctcctatattttattttatcttctc 243

                                                     
Query: 61  tgataatttaaagaatgattctttcactgtactttttcaggt 102
           ||| ||||||||||||||||| ||||||||| ||||||||||
Sbjct: 242 tgaaaatttaaagaatgattcattcactgtattttttcaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)