BAC Information

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BAC

Clone NameMSMg01-399M17
Chromosome15 (Build37)
Map Location 4,056,254 - 4,056,409
singlet/doubletsinglet
Overlap geneOxct1
Upstream geneLOC666163, EG666167, Sepp1, LOC100039139, Ghr, LOC223278, Fbxo4, AW549877, LOC100039196
Downstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399M17.T7 (MSMg01no399_m17.b1)MSMg01-399M17.TJ (MSMg01no399_m17.g1)
ACCAG499571AG499572
length711710
length of high quality
(start - end)
520 (80 - 599)156 (81 - 236)
definitionCHROMAT_FILE: MSMg01no399_m17.b1 PHD_FILE: MSMg01no399_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:54 2005CHROMAT_FILE: MSMg01no399_m17.g1 PHD_FILE: MSMg01no399_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAA
GATCCGCGGAATTCATGAAATTTCCAGACAAATGGATGGACCTGGAGGGC
ATCATCCTGAGTGAGGTAACACAATCACAAAAGAACTCAATGATATGTAC
TCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATACCCGAGATATAA
GAGACAATTTGTAAAACACATGAAACTGAAGAAGAACGAAGACCAAAGTG
TGGACACTTTGCCCCTTAGAATTGGAAACAATCACCCATGGAAGCAGTTA
CAGAGACAAAGTTTGGAGCTGAGACAATATGATGGACCATCTAGAGACTG
CCATATCCAGGGATCCATCCCATAATTAGCCTCCAAACTATGACACCATT
GCATACACTAGCAAGCGTTGGCTGAAACGACCCTGATATAGCTGTCTCTT
GTGAGACTAGGCCAGGGCCTAGCAAACACATAAGTGGATGCTCACAGTCA
GCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATC
CAAGGAGCTAAAGAGATCTGCAACCCTGCAGGTACAACATTATGAACTAA
CCAGTACCCAGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGC
CTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAATCTTTAT
ATGCCCTAGTA
TTTTCCCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCTAGAAGGGTCAGTGA
TTTCAGAGATAGCTACTTCTCAATGTACTTTCAAAGAAGATGGATGGTTC
TGTGCATTGGCAAAACACATTGCACGCATCTTCCTGTAATGCTAAGCTTG
TCAGCATCAGCATCAGCACCAGCATCAGCATCAGCATTAGCACCAGCATC
AGCATCAGCATCAGCATTATACTCCAAGGCTGGAGAATGAGCTCACATAG
TCAAGCTAAGAACCAGCCTTGCATTATGTGTTCAGCCACTTAAGCTCTCT
AAATTCAATATGTCTTTCCATCCATCCATAACTCTACATTACAGAATCAA
TTCCTTAATTCTTTACTGGTCCCCCCGTATAACACGATTTGTGATCCATA
CAACAATCCTTATATTTAAAAAGTCTGATTGGACTGTCTCACACATATTG
TGGAAATTCCTTACCCAGACGTTTTCACGTTATAAATACTACTTTCCTTA
CACTTATCAAGTTGCCATCTTGATGGCCTCTATTACTCATGAATACCCCA
CGATTTGTCTATTTCTCCTTGTACGATTGTCCCTCTCCTTTGTATCCACT
ATTATTCATTTTTTATTGAGTCACCTATCCTCTATTTCGCTTTTTTCCCC
CCCCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_m17.g1 MSMg01no399_m17.g1 CHROMAT_FILE:
MSMg01no399_m17.g1 PHD_FILE: MSMg01no399_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:54 2005
         (156 letters)



>mm_chr15_4056054_4056609
          Length = 556

 Score =  255 bits (132), Expect = 7e-73
 Identities = 150/156 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtctagaagggtcagtgatttcagagatagctacttctcaatgtactttcaaagaaga 60
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 356 aggtctagaagggtcagtgatttcagagatagctacttcttaatgtgctttcaaagaaga 297

                                                                       
Query: 61  tggatggttctgtgcattggcaaaacacattgcacgcatcttcctgtaatgctaagcttg 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tggatggttctgtgcattgggaaaacacattgcacgcatcttcctgtaatgctaagcttg 237

                                               
Query: 121 tcagcatcagcatcagcaccagcatcagcatcagca 156
           |||||||||||||||||| ||||| ||||| |||||
Sbjct: 236 tcagcatcagcatcagcatcagcaccagcaccagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)