BAC Information

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BAC

Clone NameMSMg01-400B09
Chromosome15 (Build37)
Map Location 74,966,526 - 74,967,046
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik
Downstream geneLOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400B09.T7 (MSMg01no400_b09.b1)MSMg01-400B09.TJ (MSMg01no400_b09.g1)
ACCAG499792AG499793
length789780
length of high quality
(start - end)		524 (42 - 565)459 (74 - 532)
definitionCHROMAT_FILE: MSMg01no400_b09.b1 PHD_FILE: MSMg01no400_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:16 2005CHROMAT_FILE: MSMg01no400_b09.g1 PHD_FILE: MSMg01no400_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:16 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGACATCCGCGGAA
TTCCAGAGAGTTGCCCCCGAGGATTTGAAAGTCTTCAGGTTTGATTTTAA
GTCCTAGAAAGGGTGATGCCCCACTGCTCCTTGAGAATCTTGACTTGAGT
CTACATTGTGTCTCTTACTTCGATCAATTGTCTTGCATAACCCACAACAT
TGACACTGAAGTTGGATGTACATGTGGATCCAACCAGAGATGATAGTAAG
ACTGAGACACTTCGGTCTGCCCTGTGGCTTCCATCAGGAGAATCTGCCTG
ATGTTCTCTGAGCCTCTGGCTTCCTTTCATTTGCAGCCTTGCCTGCTTAA
GTGGATGTGCTCAGCTTCACTGATTCTGTAGTCCATTTTGGGACTCAGTT
GTCCTCTGAGCATAGCTGTTCTTTTGTTGTGGTGTCATCTCAGGATGTTT
TCCAGCTCAGCTCTCATTTTGCGCCCAACTTGTATCAGTACCTTGCAGAC
ACTTAAGCAGGGCTACTCACTGGGCTCTAAGCTCTGTGAGGTTAGGAAAC
TCAGACTCTGGCTTGCTGTAGGGGTCCCTGCTGTTCATCCCACGGCTGGG
TCACAGATGCCATCAATATTTGGCTAATTAGTAAGGTTCTTAGTTATTAG
AATACTATGCCCCATGTTGGGGAAATAAAGATTAGCAAGGGAGCCCCTTT
TGGGAAATGGAAAATAAAACCCCCCAATCCTAGCGACAGGCCATATTACA
AACTTGGATAATATAAAATGAAAAATGGGGAATTTTTTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGCCCAGCACAGTGATCATAACCAG
CACTCCCAGGCTTGGCTGGCTCTTTACATGGTTGGTGGGGATTGAACTTG
GGTCCTTAGGCTTCAATGTGGCCAGCATTTCACTGACTGAGCTGCTTCCC
CAGCACATTGTATGTAAGGGCACCTGTGTACACATGTGTAGATATACATG
CACTGGCAAGGTACAAGTGTATGGGGCCCAGAAGTTGATGGGTATCTTCT
GTGACAACTATCTTATTTACTGAGGCAGTGACTCACACTGTACCCCAAGC
TTGCAGATTGAGCTGGTCTAGGCTGTGAGCTTACCTCAGGGATCTCAATC
CTTGTGTCCTGAGCACAGATATACAAGTAGGCCACCATGACTGCTCATGT
TTTTGATGTGCTCTAGTAATGAGAACTGGGGGCTCATGCTTGTGCACACA
AGCGCTTTATCCACCAAGCTTCCTTACCAGNCCACAGNTTTGATTTTTGA
TTTATTTGTTATTTGAGACAATGTCTCACTGTAGCCCCAGGATATAGTCC
CCATGTAACCCAGTTTGGAATTGAAATCCAAAAAATTTCCTGCCTCAAAC
CTCCAAGTTCTGGGATTTTAAGTTTGAATTACAGGTCGGGTTTCACAATA
TCTAAAGAACGGCTCGGTAAAAACCCCGGGGGATGGGGTCCAAACATGGA
AAGACTTGTTTCCCTCATAAAAATAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_b09.b1 MSMg01no400_b09.b1 CHROMAT_FILE:
MSMg01no400_b09.b1 PHD_FILE: MSMg01no400_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:16 2005
         (524 letters)



>mm_chr15_74966424_74967343
          Length = 920

 Score =  333 bits (172), Expect = 2e-95
 Identities = 433/538 (80%), Gaps = 44/538 (8%)
 Strand = Plus / Minus

                                                                       
Query: 10  ttccagagagttgcccccgaggatttgaa--agtcttcaggtttgattttaagtcctaga 67
           |||| ||| |||| |||||||||||||||  ||||||  |||||| |||| |||||| ||
Sbjct: 623 ttccggagggttgaccccgaggatttgaagcagtctttgggtttggttttcagtcctgga 564

                                                                       
Query: 68  aagggtgatgccccactgctccttgagaa-tcttgacttgagtc--tacattgtgtctct 124
           |||| |||| || | ||| |||| | ||| || |||||| |  |  ||||  || |||||
Sbjct: 563 aaggctgataccacgctgttcctggggaattc-tgacttca--ccatacagagtctctct 507

                                                                       
Query: 125 tact----tcgatcaattgtcttgcataacccacaacattgacactgaagttggatgtac 180
           | ||    |||||||    || |||| |||||| ||||| |||||||  |||||||||||
Sbjct: 506 ttcttcaatcgatca----tcctgcaaaacccagaacatagacactggggttggatgtac 451

                                                                       
Query: 181 atgtggatccaaccagagatgatagtaagactgagacact-tcggtctgccctgtggctt 239
           ||||||     |||||||||||||  ||||| ||||| || | | || |||||||| |||
Sbjct: 450 atgtgg-----accagagatgatacaaagaccgagactctat-gttcagccctgtgactt 397

                                                                       
Query: 240 ccatcaggagaatctgcctgatgttctctgagcctctggcttcctttcatttgcagcctt 299
           |||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct: 396 ccatcaggagcatctgcctgatgttctctgagcctctggcttccttccctttgctgcctt 337

                                                                       
Query: 300 gcctgcttaagtggatgtgc--tcagcttcactgattctgtagtccattttgggactcag 357
           ||||||||||| |||||  |  ||||||||||| ||||||| |||||||||| |||||||
Sbjct: 336 gcctgcttaagaggatg--caatcagcttcactcattctgtggtccattttgtgactcag 279

                                                                       
Query: 358 ttgtcctctgagcatagctgttcttttgttgtggtgtcatctcaggatgttttccagctc 417
           || |||||||||||||||||||| |||| ||| |||| |||  ||| ||  |||||||||
Sbjct: 278 ttttcctctgagcatagctgttcatttgctgttgtgttatca-agggtgacttccagctc 220

                                                                       
Query: 418 agctctcattttgcgccca--------act------tgtatcagtaccttgcagacactt 463
           || |||||||  | |||||        |||      ||| ||||| ||||||||||||||
Sbjct: 219 aggtctcattcagtgcccagccttcccactctagcctgtgtcagtgccttgcagacactt 160

                                                                     
Query: 464 aagcagggctactcactgggctctaagctctgtgaggttaggaaactca-gactctgg 520
           |||  |||||||||||||||||||| ||||  ||||||||||||||| | ||||||||
Sbjct: 159 aagtggggctactcactgggctctatgctccatgaggttaggaaact-atgactctgg 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 920
Length adjustment: 10
Effective length of query: 514
Effective length of database: 910
Effective search space:   467740
Effective search space used:   467740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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