BAC Information

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BAC

Clone NameMSMg01-401B24
Chromosome15 (Build37)
Map Location 70,034,349 - 70,176,866
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401B24.T7 (MSMg01no401_b24.b1)MSMg01-401B24.TJ (MSMg01no401_b24.g1)
ACCAG500584AG500585
length767766
length of high quality
(start - end)		545 (48 - 592)279 (328 - 606)
definitionCHROMAT_FILE: MSMg01no401_b24.b1 PHD_FILE: MSMg01no401_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:40 2005CHROMAT_FILE: MSMg01no401_b24.g1 PHD_FILE: MSMg01no401_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,176,326 - 70,176,866)(70,034,349 - 70,034,626)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCCATATTCACAGACACACATACAAACACCCTACACAATAAA
AAATAAAATTATATTTTAAAAATATCTTTTAAAAAAGAACTTAAAGTGTT
AGAGAAATCAAACAAATAGAGTATCAGTATTGAAATAAAAAAATTCATGA
TTAAAAATATATCTCTTAAAATCCCAGGTAATTGAGTTTGATGCAAGATT
TCAGCACAGAGATTATAAAAGAATCTTGAACCATCCCTGTTGATCACATT
TGAAAGCAGATAGGAAACCAACTCTCAGGCAGGAACATGTTAAACTTCCA
TGCTGCTGAGTCAAACCTGAGCCAGACTTACTTTGTGGCTAACACTTCAT
AATAGTTATGTGCTCAATAAATGTCCAGCCTGAATATGGATTTCACAAAA
ATGCAACACTATAGCCACCCCAAGGGTTTATGATCCATAATTCATTTTGG
AAAATGGCTTGATTCACTTGAAGCAGTAAAATCTGAGAACTTCATGGCTC
ATAATAATGTCAGGGGGAGCAATCTCCCATGCTAACTGTGTGCAGAGAAT
TAAGCCTTACTGTCTAAACACCGCATCCATCCTGTCCCACACAAATCTGT
TGGGNCCACACTGAACACTCTGATGAGAAACAGCATACTCATTCATATTT
CCCATCTGAAAATCAGCTAGGGAATATTCTGCCTTCCCCAGGAAAAAACA
CCCCAATGATGGTAGTG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTCAATGTACTCTGGTTCACATACA
GTGAATCTCTGTGTAGTCTGACAAGTGAACTAAACCAAGCATTCTTATGT
AAAATGTTTAAACTTATGTGTTGTGGTGCCTTATCAGCAGGTCTATGCAA
CATAAGCATACAGTGCTTTGGAAGCCAGAAAAAAGCATTGTATGCTCTGA
GATTGGAGTTACAGAGTATTGTGAGCTACTGTGTAGGTGCTGGAGACTGA
ATCCAATTTCTCTGGAAAATTAATCATTATTCTTAGCTGCCTTTCATGGT
TGCTGAGCCATCTCTCCAGCTCCATGCACCCCAAATTAAACATTGTTACT
ATCTAACTTTATCTTTAGAAACATGATGGTGTTTTGAATGGACAAAATAT
GTGTTCCTTGATGATCCTGAGTAAATAACTACCTCCATATATGTTTTAAC
TTACAAATTTATTTACATTTTAGGAAATTTTTAAAGGGGCTGGTGAGAGG
TCAGCTGGTAAAGGTGCTTGTTCCTCAAGCTGAACTGCCTAAATCCAACC
CCCAGAACCCATGGAAAGATGGAAGGAGAGAAATCACGTCACAAGATTGG
CAACTGATCCCCTAATGTACACTGTGGCAGGCATGAAGTCTCACACCCAA
AATAATTTTATTAATAATTATCATAGCAAAATATTTATTATTAAAATACT
GTTAAATTATTGAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_b24.b1 MSMg01no401_b24.b1 CHROMAT_FILE:
MSMg01no401_b24.b1 PHD_FILE: MSMg01no401_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:40 2005
         (545 letters)



>mm_chr15_70176037_70176981
          Length = 945

 Score = 1046 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacccatattcacagacacacatacaaacaccctacacaataaaaaataaaatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaattcacccatattcacagacacacatacaaacaccctacacaataaaaaataaaatta 771

                                                                       
Query: 65  tattttaaaaatatcttttaaaaaagaacttaaagtgttagagaaatcaaacaaatagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tattttaaaaatatcttttaaaaaagaacttaaagtgttagagaaatcaaacaaatagag 711

                                                                       
Query: 125 tatcagtattgaaataaaaaaattcatgattaaaaatatatctcttaaaatcccaggtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tatcagtattgaaataaaaaaattcatgattaaaaatatatctcttaaaatcccaggtaa 651

                                                                       
Query: 185 ttgagtttgatgcaagatttcagcacagagattataaaagaatcttgaaccatccctgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttgagtttgatgcaagatttcagcacagagattataaaagaatcttgaaccatccctgtt 591

                                                                       
Query: 245 gatcacatttgaaagcagataggaaaccaactctcaggcaggaacatgttaaacttccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gatcacatttgaaagcagataggaaaccaactctcaggcaggaacatgttaaacttccat 531

                                                                       
Query: 305 gctgctgagtcaaacctgagccagacttactttgtggctaacacttcataatagttatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gctgctgagtcaaacctgagccagacttactttgtggctaacacttcataatagttatgt 471

                                                                       
Query: 365 gctcaataaatgtccagcctgaatatggatttcacaaaaatgcaacactatagccacccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gctcaataaatgtccagcctgaatatggatttcacaaaaatgcaacactatagccacccc 411

                                                                       
Query: 425 aagggtttatgatccataattcattttggaaaatggcttgattcacttgaagcagtaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aagggtttatgatccataattcattttggaaaatggcttgattcacttgaagcagtaaaa 351

                                                                       
Query: 485 tctgagaacttcatggctcataataatgtcagggggagcaatctcccatgctaactgtgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tctgagaacttcatggctcataataatgtcagggggagcaatctcccatgctaactgtgt 291

            
Query: 545 g 545
           |
Sbjct: 290 g 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no401_b24.g1 MSMg01no401_b24.g1 CHROMAT_FILE:
MSMg01no401_b24.g1 PHD_FILE: MSMg01no401_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:40 2005
         (279 letters)



>mm_chr15_70034148_70034826
          Length = 679

 Score =  514 bits (266), Expect = e-150
 Identities = 275/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   attcttagctgcctttcatggttgctgagccatctctccagctccatgcaccccaaatta 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 attcttagctgcctttcatggttgctgagccatctctccagctccatgcaccccaaatta 261

                                                                       
Query: 62  aacattgttactatctaactttatctttagaaacatgatggtgttttgaatggacaaaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 262 aacattgttactatctaactttatctttagaaacatgatggtgtttttaatggacaaaat 321

                                                                       
Query: 122 atgtgttccttgatgatcctgagtaaataactacctccatatatgttttaacttacaaat 181
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 322 atgtgttccttgatgatcctgagtaaataactacctccatataggttttaacttacaaat 381

                                                                       
Query: 182 ttatttacattttaggaaatttttaaaggggctggtgagaggtcagctggtaaaggtgct 241
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 382 ttatttacattttaggaaatttttaaaggggctggcgagaggtcagctggtaaaggtgct 441

                                                 
Query: 242 tgttcctcaagctgaactgcctaaatccaacccccaga 279
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgttcctcaagctgaactgcctaaatccaacccccaga 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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