BAC Information

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BAC

Clone NameMSMg01-401P14
Chromosome15 (Build37)
Map Location 61,573,731 - 61,573,886
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401P14.T7 (MSMg01no401_p14.b1)MSMg01-401P14.TJ (MSMg01no401_p14.g1)
ACCAG501232AG501233
length744719
length of high quality
(start - end)
156 (133 - 288)205 (376 - 580)
definitionCHROMAT_FILE: MSMg01no401_p14.b1 PHD_FILE: MSMg01no401_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:43 2005CHROMAT_FILE: MSMg01no401_p14.g1 PHD_FILE: MSMg01no401_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTTTCTATCTAAATTTGCGGGCGCGAAAAGAACCACATTTCAGACCGG
GGGNGNGGNAANCAGGTATGACAAATAAAGCGTGAACNNGGCNCNCTATC
AACACATTACAACGCAGGAGCATCTGGACCCAAATCTGGGAGACTTTTTT
CGAGAGTAACAGGAGGGTAAATGTTAAGGCAGAGTGGAAAGAGGTCAACA
AAGTTAGGTTGACTATTCCCCATTGTTACAAGAAGCGCTGTAAAATACTG
CCTATGGTTTTTCAATGAGCTGTGGAGGCAGCTGGCAGGAATGGCTCAAT
GGACTCACAGTCCAGCGAAAGATTTATTGTTTCTCAGCAGAAAGAGAAGA
GCTAAAAGACGGAATAGAATAAAACTATGTTGCACAGCAAAGGCAATGGT
GGCCCCCTTAGGCCCATAGATTAAATATGAATACTTATCTATTGGGGAAT
GGCTCTACTTATGAGGAATTATGTTTGTGCTTACTGTGGAGTGTCTTCTT
CCCTTTTTTTTTTCTCTCCTTCTCTCCCCTTCTCCTTTCTCTGCTTTCCT
CCTTTTTTTCTTTTCTCTCCTCTCTTCTCTTTTCTTTCCCCTCTCCCCCT
TTTTGATTCCCTTTTTTTATTTCTCCCCTACCCTTTTATACACTTTTTTT
TCCCTATTTCTTCTTGTTTTTTTTTTTCTTTCCCCTTCCTTTTTCTTCTT
CTTTTACTTCCTCCTTTTTATTTCTTTTTCTACTTCTTTCTTTT
TTTTTTTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXTTCACATCAT
GTAGGNGAACTATAGAATGTCAAAAACAATTCCTTTGGNGTCTGGTTTGG
TCAAAGAAGCTGTTTTTTTTTCCCCTTCCCAGAAGGAAACAGTTAATGTG
TGTACGACTGGTCTAAGAGCTGAGAATAAGTGATTGTGAATGATCAGAAG
TAAATGGGACATCTACCTTAAATTTTTACCCTCTAAGGCTCAGAGAACAT
TCCAGAATTTAGGAGGGAAAGAATGTAAGATGCATAGAACAAGGAGAAGT
GCTGTGCAATGTTGCCTTTTATTTACTACATGGCCGNNGNACTCCTGAAC
TTACAGCAGCTGTGCTTATCTGCACAAGAGCCAAGGAAGAGCAAGCTAGG
AAATGTTCTAGCACAAGTTGGGAAGAGATTCACCAGATCATCTCCCTACT
AGCTAAGGAGCTATTGATTTCTGGAGAGGGAGAGTCGTTTTTGGTTAAGG
AGTAGTAGGTTACTCATGCTTCGCTGAATGACTACCTATGTACGGGTGGG
CTACACGAGTTAGGCCCTGTGGTTTTGATAAGAAACAAAGCAAAAAGAAT
AGGACATGAAGTTGAGAGAGGATGTTGTTTGGTGAGACCTGAGCAGCGCT
GTATTTTATTTTTGTATGGGGATATGACACCCATACTCACTCCTACCTCC
ATCTTCTCTCTCCCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_p14.b1 MSMg01no401_p14.b1 CHROMAT_FILE:
MSMg01no401_p14.b1 PHD_FILE: MSMg01no401_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:43 2005
         (156 letters)



>mm_chr15_61573531_61574086
          Length = 556

 Score =  255 bits (132), Expect = 7e-73
 Identities = 150/156 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctgggagacttttttcgagagtaacaggagggtaaatgttaaggcagagtggaaaga 60
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 aatctgggagacttttttcaagagtaacaggaggggaaatgttaaggcagagtggaaaga 260

                                                                       
Query: 61  ggtcaacaaagttaggttgactattccccattgttacaagaagcgctgtaaaatactgcc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ggtcaacaaagttaggttgactattccccattgttacaagaagcactgtaaaatactgcc 320

                                               
Query: 121 tatggtttttcaatgagctgtggaggcagctggcag 156
           |||||||  ||| |||||||||||||||||||||||
Sbjct: 321 tatggttagtcagtgagctgtggaggcagctggcag 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)