Query= MSMg01no402_m13.b1 MSMg01no402_m13.b1 CHROMAT_FILE:
MSMg01no402_m13.b1 PHD_FILE: MSMg01no402_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:48 2005
(239 letters)
>mm_chr15_89466410_89467048
Length = 639
Score = 321 bits (166), Expect = 2e-92
Identities = 184/190 (96%)
Strand = Plus / Minus
Query: 48 catttttcagaatgtgatgtgtgttgagaatatccactaaagtgaacagagtacaggttg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catttttcagaatgtgatgtgtgttgagaatatccactaaagtgaacagagtacaggttg 378
Query: 108 gttttatcctgctttcacacccctagagagatcagtaacctgaccaagctgaaatgtctt 167
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gttttatcctgctttcacatcactagagagatcagtaacctgaccaagctgaaatgtctt 318
Query: 168 attttattctatatgcagatttcaaaggaaaattgcttaaacacataatttaccataagc 227
|||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 317 attttaccctatatgcagatttcaaaggaaaattgcttaagcacatgatttaccataagc 258
Query: 228 tacaaaatcc 237
||||||||||
Sbjct: 257 tacaaaatcc 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no402_m13.g1 MSMg01no402_m13.g1 CHROMAT_FILE:
MSMg01no402_m13.g1 PHD_FILE: MSMg01no402_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:48 2005
(510 letters)
>mm_chr15_89276857_89277766
Length = 910
Score = 872 bits (451), Expect = 0.0
Identities = 497/513 (96%), Gaps = 3/513 (0%)
Strand = Plus / Plus
Query: 1 tcttatctctgcctcttgtctctcattagaggcatgctgagatccaaaccagatgcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttatctctgcctcttgtctctcattagaggcatgctgagatccaaaccagatgcacac 260
Query: 61 tcacatctgacatttatgaggattccacgtatccaatctccaattggcaggctggtgcag 120
||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 261 tcacatctgacgtttatgaggattccacggatccaatctccaattggcaggatggtgcag 320
Query: 121 caagtgcttcagccactttatgagtgcttttggtttttcaactttatgagtgctttaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtgcttcagccactttatgagtgcttttggtttttcaactttatgagtgctttaacc 380
Query: 181 acttataaaaggaaagcttggggctgaagagatggctcagcagttaagagcactgactgc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 acttataaaaggaaagcttggggctggagagatggctcagcagttaagagcactgactgc 440
Query: 241 tcttttgaacgtcctgagttcaaatcccagcaaccacatggtggctcgcaaccatctcat 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 tcttccaaacgtcctgagttcaaatcccagcaaccacatggtggctcgcaaccatcttgt 500
Query: 301 aacaagatctgatgccct-cttctgttgtgtctgaagacaactacagtgtacttacgtaa 359
|||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 aacaagatctgatgtccttcttctgttgtgtatgaagacaactacagtgtacttacgtaa 560
Query: 360 aactttgggctggagtgagtggggctggagcgagcagaggtcctgagttcaatttccagc 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactttgggctggagtgagcggggctggagcgagcagaggtcctgagttcaatttccagc 620
Query: 420 aaccatatgatggctcagaaccatctgtacaactacagcatactcatatacataaaataa 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 aaccatatgatggctcagaaccatctgtacaactacagcatgctcatatacataaaataa 680
Query: 480 atcttaaaaaaaa--tgaaaggaaagcttgaac 510
||||||||||||| ||||||||||||||||||
Sbjct: 681 atcttaaaaaaaaaatgaaaggaaagcttgaac 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
