BAC Information

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BAC

Clone NameMSMg01-403B06
Chromosome15 (Build37)
Map Location 34,718,407 - 34,718,806
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2
Downstream geneKcns2, Stk3, Osr2, Vps13b, EG666183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403B06.T7 (MSMg01no403_b06.b1)MSMg01-403B06.TJ (MSMg01no403_b06.g1)
ACCAG502074AG502075
length577761
length of high quality
(start - end)
44 (38 - 81)400 (74 - 473)
definitionCHROMAT_FILE: MSMg01no403_b06.b1 PHD_FILE: MSMg01no403_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:13 2005CHROMAT_FILE: MSMg01no403_b06.g1 PHD_FILE: MSMg01no403_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCGGCGCTAAAGACTCACTATTCGAGAGGTCCGCGGAATTCAT
TTTTTACACTCCCCGCCCCTCCCCTCCCACCTCTCCAACTGGNTCCACAT
CCCACACCTCCTCCCTAACAAACCCACTTGGATGTCCCCACCCTCCAACC
CCTTGGGAACTCTAAAATGCCCTGGGGCCTTCCAAATTCCTTTGAGGAAA
AAAAGGGGGATTTCTTTTTTTTCAAAAAAGAAAAAAAAAAAAAAACCCCT
CGGGGAAGAAAAACCCCCCCCCCCCCCCCCCCTCCAAAAAAATGGGGGGG
GGGGGGGGGCCCCCCTTCCCTCTTTTAATTAATAATATTCGGTTTTTGGG
CGGGTGTGTTCGCCGCCCTTTTTGCCTCTTGAAGTCCCCCTTCGTTCTCT
GCCATCCCCTGCGTCNCGCATCTTTTTTTCTTTTCGGGTGCGCTTTTTCC
GGCCTTACCATTTTTTGCTTCCTTTTCCTCTCCCTCTCGTACAATACTTT
TGTCNNGGGGGGCGNNGGTCCGGCGTTTGAAAAATAACAATATTTTATNT
TATGATTTTTATTTAAGAATGAAGAAA
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCTTTGAAAATGACGCAAAAATTAA
AACGTAAAACAGCTTTAAAATTATCCCACCTGTAGTTAAACCAACAACTG
TGGTTATTTGTAACTATTTCTTTCATGAGCTAGTGAGAAGATGGCAGCAC
CCAATCCCATTGTTCCAAGAGTTCCTTTTTCTGTTCTAGGTTTGGAATCA
ACTCAAGCTCAGGCCTCCAGATACCCCCAGCCTCAGCCCCTCCTTACATA
TAAAGCTTTGCAGAGCAAACTCTACAGGTCTTGGCATCTGATAGGTAGAC
GTTACCTGGATTCTCTCCTGGCCCTTGCTGGGTACGTGTTGATACAGAAG
CATGGATGTGGGACCAGGGTCACATATGTCAGGTACCTGGGTGACTTCCT
CAGAAGGTTTTTCCCTGGCTAGGTAGCATCAAGTCATGGCTCCTTTGGAT
CAAGAGAAGAGGTGAGGAACAGAAATATAAGCACAGCTCTTGTAGCATCA
CTGGCTCAAAAAAGGTCGCCCACGACAGCGCGAGGATGCTTTTAGTTCTA
TACGCGCCCGATCCTCCCGGCCCAATTCCAGGCGTTTTTTTTCTTTTTGT
TTATCCCGTTCTTAGCCCTTATCCCCCCTTCGTAAAGGTACTCTCCTCTT
TACCCCCGTCCCATTCCCCAGGTTTTTCTCCCTCTGTAACCCATAACAGT
TTACTCCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_b06.g1 MSMg01no403_b06.g1 CHROMAT_FILE:
MSMg01no403_b06.g1 PHD_FILE: MSMg01no403_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:14 2005
         (400 letters)



>mm_chr15_34718207_34719006
          Length = 800

 Score =  719 bits (372), Expect = 0.0
 Identities = 393/400 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctttgaaaatgacgcaaaaattaaaacgtaaaacagctttaaaattatcccacctgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 attctttgaaaatgacgcaaaaattaaaacgtaaaacagctttaaaattatcccacatgt 260

                                                                       
Query: 61  agttaaaccaacaactgtggttatttgtaactatttctttcatgagctagtgagaagatg 120
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 agttaaaccaacagctgtggttatttgttactatttctttcatgagctagtgagaagatg 320

                                                                       
Query: 121 gcagcacccaatcccattgttccaagagttcctttttctgttctaggtttggaatcaact 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gcagcacccaaccccattgttccaagagttcctttttctgttctaggtttgggatcaact 380

                                                                       
Query: 181 caagctcaggcctccagatacccccagcctcagcccctccttacatataaagctttgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagctcaggcctccagatacccccagcctcagcccctccttacatataaagctttgcag 440

                                                                       
Query: 241 agcaaactctacaggtcttggcatctgataggtagacgttacctggattctctcctggcc 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 agcaaactctacaggtcttggcatctgataggttgacgttacctggattctctcctggcc 500

                                                                       
Query: 301 cttgctgggtacgtgttgatacagaagcatggatgtgggaccagggtcacatatgtcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgctgggtacgtgttgatacagaagcatggatgtgggaccagggtcacatatgtcagg 560

                                                   
Query: 361 tacctgggtgacttcctcagaaggtttttccctggctagg 400
           |||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tacctgggtgacttcctcagaaagtttttccctggctagg 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)