BAC Information

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BAC

Clone NameMSMg01-404H02
Chromosome15 (Build37)
Map Location 66,227,559 - 66,227,801
singlet/doubletsinglet
Overlap geneLrrc6
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, LOC100040860
Downstream geneTmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404H02.T7 (MSMg01no404_h02.b1)MSMg01-404H02.TJ (MSMg01no404_h02.g1)
ACCAG503110AG503111
length756743
length of high quality
(start - end)
249 (63 - 311)210 (66 - 275)
definitionCHROMAT_FILE: MSMg01no404_h02.b1 PHD_FILE: MSMg01no404_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:07 2005CHROMAT_FILE: MSMg01no404_h02.g1 PHD_FILE: MSMg01no404_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCCAGAC
TCTTCCCATCCAGATGGTAAAATCTATTTTGGACGGAGGCAAACTTATCT
CTGTGCTCCAAATGTATATGCTGAATTGCATCATAAAAAATACCTCCACA
AGAGCTTTGTTTGTGCTTTGCATCATAAAACCTCAGCTATTTGTGTAGTC
AAAGACAACTGTGGAGGTTTTGTAGTGATTTTTAAATATTGGATTTGCTT
GAACAACAGACATGGAATTGAGATTCTACTGAAAACTGACTCTGTGTTTT
TAACCTTGGAAAGTTATTCTTAATTCCCAACGTGGTGGTTTTTTACTACA
GATAACAGATTCTAGGGTACCATGTCTTATGTGAATATTAGTTATAATCA
ACCCTAACACCCTCAAGCCATGTAAACAATCTGAACTAATTGGGAAGCAA
CCGTGGGATAGGAAGACTAATCACTTTGGTTTGTAGGTGTTTATCAGACC
CACTATAACATCATTACCATGATTTGCTGGCATTTGTAAATGCCCCAGCT
TATTTCTTCTTATAACTCGCTCCCCATTTTTTTTGTTATACAAAGATTGT
CTCATCTTTCTCCCCTCCCATTGTTTAAAGTAGAATATAGATAATTCCAA
CCTTTTTTAATTAAAAAACTATTATGTACACCTATACCCCTCCTTTCCAT
TATTATTTTACTGCCTTTTAATCACTCAACCCCCCTCGCATATATTTTTC
ATTCTC
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCTGCGCTGAAGACTTTTCTAAAAGAACGCTCTT
TCTCAAAAGTGCTGAGCCCACCAACAAATCAGATCTCCCTCTTTAATGTT
ATTCATCAGCTAAAGGAAACAGAGACCCCTTGGAGCAGTCATGGCTAGAT
GTACCAGAGCAGAGACTGTGAAGATGCACCTAGAGTGTCACGAAAAGGTC
AGGTGATTGGGGTGGGGAGGGAGTGNAATTTTTTTTTTTNNTTTTTTTTT
CTCTNTTTNTTTTTTTTTTTTTTNCNCCCCCTCCCCCCCNNCCACCGCCC
TTTTTTCTTCTCTACCTATACTCGTTCTTTTTATATCCGCTTATTATTAT
GTTACTTTATTAAAAATGTACTTATGCTTTGTTCTTTTTTATACTCCATT
TATTTTTTTCGCCTATGTTTTACCTATCTTTTATTTTGCCGTACTTTTTT
TTGCCCCCCCATTGTTTCCTTGTTTCTCTTCTGTTCCCTCTTTAACCATC
TCCCGCCTTTTATTTTCTTTCTCGTCTTGTAAATCCCTTCCGCCGCCGTT
TTTTTTATTTTTAATCCACCCACCCGCACTTTTTTTTTAAAATCCCTCCG
CCCCCGATTATCTTTTATATTAAAGTTTTTGCCTTCCGCGGGCCTTTTAT
GTTACTCACTATATAAATAAACTCTTTATTCCTCCCTTCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_h02.b1 MSMg01no404_h02.b1 CHROMAT_FILE:
MSMg01no404_h02.b1 PHD_FILE: MSMg01no404_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:07 2005
         (249 letters)



>mm_chr15_66227359_66228001
          Length = 643

 Score =  424 bits (219), Expect = e-123
 Identities = 239/249 (95%), Gaps = 6/249 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatggtaaaatctattttggacggaggcaaacttatctctgtgctccaaatgtatatgct 60
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 443 gatggtaacatctattttggactgaggcaaacttatctctgtgctccaaatgtatatgct 384

                                                                       
Query: 61  gaattgcatcataaaaaatacctccacaagagctttgtttgtgctttgcatcataaaacc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 383 gaattgcatcataaaaaatacctccacaagagctgtgtttgtgctttgcatcacaaaacc 324

                                                                       
Query: 121 tcagctatttgtgtagtcaaagacaactgtggaggttttgtagtgatttttaaatattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcagctatttgtgtagtcaaagacaactgtggaggttttgtagtgatttttaaatattgg 264

                                                                       
Query: 181 atttgcttgaacaacagacatggaattgagattctactgaaaactgactctgtgttttta 240
           ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||
Sbjct: 263 atttgcttgaacaacagacatgga------attctactgaaaactgactctgtgttttta 210

                    
Query: 241 accttggaa 249
           |||||||||
Sbjct: 209 accttggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 643
Length adjustment: 9
Effective length of query: 240
Effective length of database: 634
Effective search space:   152160
Effective search space used:   152160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)