Query= MSMg01no404_j09.b1 MSMg01no404_j09.b1 CHROMAT_FILE:
MSMg01no404_j09.b1 PHD_FILE: MSMg01no404_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:19 2005
(486 letters)
>mm_chr15_15220154_15221039
Length = 886
Score = 675 bits (349), Expect = 0.0
Identities = 381/395 (96%), Gaps = 8/395 (2%)
Strand = Plus / Minus
Query: 4 ggaattcagaacttatcc--cagttctttccagggacatctttaataagattttaatggt 61
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggaattcagaactta--cagcagttctttccagggacatctttaataagattttaatggt 336
Query: 62 tttattcagttattgttgttttcttttgatagacatatatgctgtatttatttttaacac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tttattcagttattgttgttttcttttgatagacatatatgctgtatttatttttaacac 276
Query: 122 ttctatattattcagaaaattgaaagttttgcaattattttgtaaattttttaaccttcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttctatattattcagaaaattgaaagttttgcaattattttgtaaattttttaaccttcc 216
Query: 182 tttaagctgaac----tgttgtggtaaaaattattcaggttttctaaactgccttgtatc 237
|||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 215 tttaagctgaacaacatgttgtggtaaaattttttcaggttttctaaactgccttgtatc 156
Query: 238 attcaattcccagttaaaagacacaaaacctttacatgtattttaagcgttaacagcact 297
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 155 attcaattcccagttaaaagacacaaaacctttacatgtataataggcgttaacagcact 96
Query: 298 agagtttgcatatatcaactctctatgctattttgtgtatattccagtcaataataccaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 agagtttgcatatatcaactctctatgctattttgtgtatattccagtcaataataccaa 36
Query: 358 gttattacatgccatattttgcttgggcgtctctt 392
|||||||||||||||||||||||||||| ||||||
Sbjct: 35 gttattacatgccatattttgcttgggcttctctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_j09.g1 MSMg01no404_j09.g1 CHROMAT_FILE:
MSMg01no404_j09.g1 PHD_FILE: MSMg01no404_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:19 2005
(458 letters)
>mm_chr15_15052493_15053350
Length = 858
Score = 714 bits (369), Expect = 0.0
Identities = 378/381 (99%)
Strand = Plus / Plus
Query: 1 agctttcacatccacggaaaacaggagccacacacaatattcagggttagtggtgaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctttcacatccacggaaaacaggagccacacacaatattcagggttagtggtgaaaaa 260
Query: 61 taaataatacaggactctttcaaggtccataattggagtaagttcactttaatactttaa 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaataatacagggctctttcaaggtccataattggagtaagttcactttaatactttaa 320
Query: 121 taggatccattggagagtaaatctgatactagcagccattgtgatttcagctctaattgc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggatccatcggagagtaaatctgatactagcagccattgtgatttcagctctaattgc 380
Query: 181 ttacattgcaagctggtacaaccactctgggaaccagtctggaggttcctcagaaaattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacattgcaagctggtacaaccactctgggaaccagtctggaggttcctcagaaaattg 440
Query: 241 gaaatagtgttacctgtagacctagctataccactcctggacatataccaaaaagatact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatagtgttacctgtagacctagctataccactcctggacatataccaaaaagatact 500
Query: 301 tcaacacataaaaaggacacatgcttcacaatgtttgtagcagccttatttatcacagcc 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaacatataaaaaggacacatgcttcacaatgtttgtagcagccttatttatcacagcc 560
Query: 361 agaagaaggaaagaaccgaga 381
|||||||||||||||||||||
Sbjct: 561 agaagaaggaaagaaccgaga 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
