XXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCATTCTG
TTTCAGAGTTTGAGGAAGGCCTCACCCCGAAGTCTAGGCTGGCTTCAAAC
ATGAGACACACACACATAACGTCTACAAAACAGAAGGCAACCTAATTGAT
AATAGTGAAATCAGCAATAGAACTTGATACTACCCCATCATCAGCAATAG
AACTTGATCAGCTAATATCTCCAAGGTCCTACCACCCTTGTGGTGAAGTT
TCCCGTTAGTGAGGATGTGATTTTACATTTCTGATGACCTTCTGGGTAAT
TTCAGGTTTGGTGGACGCGGACTGCATCTTGTCAGACCCAATTAGACCAT
TGGCATTTACTACGTTGTTGGTGATGAACTCAGATATGAAATTTTTCTTT
CCTTTCTGCTCCCAAGTGCTCATTTAGATTAGCCTCCTTGTAAGCCGCTT
GCCCATTTTGAGAAAGCTAGTTTAGTTAGATTCATTCCTAAGGCAGCATT
TGAACATAGTTCTGGGCTCTTGAGGTGTGTCAAGGTAGAACTGAGACAGT
TGGCCTCAGGAAACCATACATAGCTGCACATAGATTGCTGAGGGCAGATG
AAGGGGTATGGCTCTGAGGGGTCACGCTATCTGCCCACGAGACCTACCGA
TGGACAGTCCAACTGAAGACAAGCGCGGCAGCCCACGCGTTAGTTGGCGG
CAATTTACTTTATGTGATTTGTTTCCCAAATGCAACCTATTGTTATGCAT
C

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTTCCACCCCAAAACACTGGCTCCTTGTCAGTTTTCA
ATCATGGGACTGTGAACTCAACTTGTGGGTCTGTGGCATGTCCCCATAGG
AAGCCCCAGGAATGGGCCTTAGTGACACAAGCCTGTGACTGGACCTGCCT
CAAGGACCCAGAACTGAGAGCACATGTGTCTCAGGGGTCTCAGTCTGGGA
GCCGCTTTCAAACCTTGTGGCACACTATTTCCAGTATGTTCCCATTAAAA
AACCATGTTCTCCTCTACAACAACAACACAACAACAGCAGCAGCAGCAAA
CCCAGATGCCATTCTCTGATGGCCGATTTGAATTCTAGAAACAGCTGAGT
CTGGGGATCCAGGCTGGCGATCCATTTTGGAACACACATGTGTTTTTTTA
AGTGGGAATCGAGGAATGCTTTTATGTCTGTCAAACTGGTCTTCCTAAGA
GACTCCCAACCTGATATTCTAAATCTAATGCTGACTCCCTCAATAGAGGC
AGCATGCTGATTTAAAGTGCATCACTCAGAGATGGCTCAGTGGGTAAAGG
CCCCTGTGGCTAAGCCCGATTCTCTAAGTGTGGTGGTTTGCATAGGATCA
TGTACCCAGTGACTCAAGCATTTGAATGCTTGACCCAAAGGGAGTGGCAC
TATTAAGAAAGTGTGGTCTTGTTGGAGGGCGCGCGGCCCTATTTGCTCAA
CT

Query= MSMg01no404_n15.b1 MSMg01no404_n15.b1 CHROMAT_FILE:
MSMg01no404_n15.b1 PHD_FILE: MSMg01no404_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:39 2005
         (487 letters)



>mm_chr15_31170629_31171515
          Length = 887

 Score =  919 bits (475), Expect = 0.0
 Identities = 484/487 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaggaaggcctcaccccgaagtctaggctggcttcaaacatgagacacacacacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaggaaggcctcaccccgaagtctaggctggcttcaaacatgagacacacacacata 260

                                                                       
Query: 61  acgtctacaaaacagaaggcaacctaattgataatagtgaaatcagcaatagaacttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgtctacaaaacagaaggcaacctaattgataatagtgaaatcagcaatagaacttgat 320

                                                                       
Query: 121 actaccccatcatcagcaatagaacttgatcagctaatatctccaaggtcctaccaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaccccatcatcagcaatagaacttgatcagctaatatctccaaggtcctaccaccct 380

                                                                       
Query: 181 tgtggtgaagtttcccgttagtgaggatgtgattttacatttctgatgaccttctgggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtggtgaagtttcccgttagtgaggatgtgattttacatttctgatgaccttctgggta 440

                                                                       
Query: 241 atttcaggtttggtggacgcggactgcatcttgtcagacccaattagaccattggcattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcaggtttggtggacgcggactgcatcttgtcagacccaattagaccattggcattt 500

                                                                       
Query: 301 actacgttgttggtgatgaactcagatatgaaatttttctttcctttctgctcccaagtg 360
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 actatgttgttggtgatgaactcagatgtgaaatttttctttcctttctgctcccaagtg 560

                                                                       
Query: 361 ctcatttagattagcctccttgtaagccgcttgcccattttgagaaagctagtttagtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcatttagattagcctccttgtaagccgcttgcccattttgagaaagctagtttagtta 620

                                                                       
Query: 421 gattcattcctaaggcagcatttgaacatagttctgggctcttgaggtgtgtcaaggtag 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gattcattcctaaggcagcatttgaacatagttctgagctcttgaggtgtgtcaaggtag 680

                  
Query: 481 aactgag 487
           |||||||
Sbjct: 681 aactgag 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no404_n15.g1 MSMg01no404_n15.g1 CHROMAT_FILE:
MSMg01no404_n15.g1 PHD_FILE: MSMg01no404_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:39 2005
         (264 letters)



>mm_chr15_31330875_31331538
          Length = 664

 Score =  487 bits (252), Expect = e-142
 Identities = 261/264 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaacaacaacacaacaacagcagcagcagcaaacccagatgccattctctgatggccga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acaacaacaacacaacaacagcagcagcagcaaacccagatgccattctctgatggccga 405

                                                                       
Query: 61  tttgaattctagaaacagctgagtctggggatccaggctggcgatccattttggaacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 404 tttgaattctagaaacagctgagtctggggatccaggctggcgattcattttggaacaca 345

                                                                       
Query: 121 catgtgtttttttaagtgggaatcgaggaatgcttttatgtctgtcaaactggtcttcct 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 catgtggttttttaagtgggaatcgaggaatgcttttatgtctgtcaaactggtcttcct 285

                                                                       
Query: 181 aagagactcccaacctgatattctaaatctaatgctgactccctcaatagaggcagcatg 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 284 aagagactcccaacctgatattctaaatctaatgctgattccctcaatagaggcagcatg 225

                                   
Query: 241 ctgatttaaagtgcatcactcaga 264
           ||||||||||||||||||||||||
Sbjct: 224 ctgatttaaagtgcatcactcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)