BAC Information

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BAC

Clone NameMSMg01-404P06
Chromosome15 (Build37)
Map Location 72,909,762 - 72,910,005
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120
Downstream geneChrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404P06.T7 (MSMg01no404_p06.b1)MSMg01-404P06.TJ (MSMg01no404_p06.g1)
ACCAG503498AG503499
length783767
length of high quality
(start - end)
65 (82 - 146)244 (68 - 311)
definitionCHROMAT_FILE: MSMg01no404_p06.b1 PHD_FILE: MSMg01no404_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:48 2005CHROMAT_FILE: MSMg01no404_p06.g1 PHD_FILE: MSMg01no404_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGAAAANGAANCACTATTCGTACCTAGCCGCGGAANNCNCNGT
TTGCACAAAACGGAGGGANNAAAGGGGNGNTTCTCTGGAGTCTAACTTCT
TGAGTTCTCTGTATATTTTGGCAGTCTTTTTTTTTTTTTTTTTTTTTTTT
TCGAGACAGGGTTCCTCTGTATAGGCCTGGTTGACCTGAAACTCAATTTC
AACTTGTAAACCAGGTTGTCCTCGAACTCGGAAATCATTTGCCTCTGCCT
CCCAAGTGCTGAAATTAATGGCGCGCGCCACCATGGCCTATTTTGGCAGA
CTTTTTTTTTTACACCAACTTTCACCACCCCCAGTAATTTCTCCAATAAA
GGACCTAAACAATGGGGGTCAACTACACATAATAATCTATTCCTTTCACT
CCCCCCTCTCTTTGTATTTCTTAAACTCTGCCTTTTATTCCCAATCTGTA
TTTTTACTTTCTTTCCCCCCTTTTATTATTCTTTCTTTTCACACCCCCCT
ATATATTTTTTTAAAATTTATATTCACCACCACTATTTTCTTTCACCCCC
CCCCTTAATTTTTATTATTTTCACCTCTATACCTTCTTCTATTTTTCCTA
CACATCATTTTCTCATTTATATTCCCCCCGTTTTATAATATTTTTTTTTT
TATTTATCCCCCCCCCTTTTTTTAATCCTTCTCCCTTTTTTATCACCCCA
TATCCCCTCTTCCCAATTTTTTATTATACATTTTTCTGTTATAATAAAAC
TCACACCCCCCCTCTTTCTTTTTTTTTTCTTTN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTTCTGACGCAATCAGCTTATGTTCAATGCATGAATTAGGCAGGAT
TGAAGGCAAGTGACCTGCAACCCCTTCAGCATGGAAGCCCCAGAAGAAAA
GACACTCTGTGGGCCATCAGAGGCCTTACCTGACAGTTCAAAGTCTCTCT
AATGCGGTCAGAAGCCAGGCTACCCCACAAGCCTTGTGGCTACCATCCCT
CCTGCAATAGTCACTGTGGCCAACTTGCTTTCAACAGACACTCCCTCTGA
TGACTGGAGATATTTTCTTGGACCTGTTTTGCTGGGCCATGCTGCCACTG
AAGTCATCTCTAGGTACCAATGAAGCATCAGTGCAGAAAACCAGCCTCTA
GATCCGCCCATTTTGGTTGGAGTGCATAGCTGCTATAAGCACAGTTGTTT
CCATAAGCATTTATTTGGCAGCACACTCTTACATGCGCTCATTTGTACCT
GACAGTAATGACTGGAAGCTCATTTATTCTGCATTCTGCCCCTGAACGCC
ACTGCCTGTCTTGCTTACTCATTATTACCCCACCTGGCGCAAGTTTTACT
ATTCTTTTTCTCCCCCTTCCCTCCCCTACTTTTTTATATATTCCCCGTCG
CCACTTTTATTTTTTGCTCTTTATCTTCCATTACTTGCCTATCTCCTCTC
TCTTTCTCTTTTTTCTTCTCCCTTTTTATTTTTTTTTTTCTTTTTATTCT
TCCTTCTTTTCCCATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_p06.g1 MSMg01no404_p06.g1 CHROMAT_FILE:
MSMg01no404_p06.g1 PHD_FILE: MSMg01no404_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:48 2005
         (244 letters)



>mm_chr15_72909562_72910205
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcttatgttcaatgcatgaattaggcaggattgaaggcaagtgacctgcaaccccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcttatgttcaatgcatgaattaggcaggattgaaggcaagtgacctgcaaccccttc 260

                                                                       
Query: 61  agcatggaagccccagaagaaaagacactctgtgggccatcagaggccttacctgacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcatggaagccccagaagaaaagacactctgtgggccatcagaggccttacctgacagt 320

                                                                       
Query: 121 tcaaagtctctctaatgcggtcagaagccaggctaccccacaagccttgtggctaccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaagtctctctaatgcggtcagaagccaggctaccccacaagccttgtggctaccatc 380

                                                                       
Query: 181 cctcctgcaatagtcactgtggccaacttgctttcaacagacactccctctgatgactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcctgcaatagtcactgtggccaacttgctttcaacagacactccctctgatgactgg 440

               
Query: 241 agat 244
           ||||
Sbjct: 441 agat 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)