BAC Information

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BAC

Clone NameMSMg01-405D10
Chromosome15 (Build37)
Map Location 103,103,114 - 103,103,603
singlet/doubletsinglet
Overlap geneCopz1
Upstream geneD15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2
Downstream geneGpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405D10.T7 (MSMg01no405_d10.b1)MSMg01-405D10.TJ (MSMg01no405_d10.g1)
ACCAG503698AG503699
length743762
length of high quality
(start - end)		509 (49 - 557)489 (77 - 565)
definitionCHROMAT_FILE: MSMg01no405_d10.b1 PHD_FILE: MSMg01no405_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:08 2005CHROMAT_FILE: MSMg01no405_d10.g1 PHD_FILE: MSMg01no405_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCTCTATTATTTGCGGGCGGTAATAGACTATTATACGCAGAGGATCC
GCGGAATTCTCCTTTTCCCCTGCATGTTCTCTTCAACTTTGCCACTGACT
CCTGCTCTCTTGCCGGCAAGGCTTCCTACTCTATACCGCGGCTCTAGCTC
CCATTGTAGGCCACACTTGCATTGCACAGATAGCGGGAGCTTTGGCCCCC
GAGGCCTGCCCAGAACCCTCTCCCGGCCCCAGCTGATGAGCCCCACCTCC
CGGACCCCCTGGACACCACAACGGAGCCACTGGCCCTCCAGCTCCTACCA
AAATCAGCGCCTCCATCTTGTCCGTAGCTGCTGCCGACGTGGAGTCGCAC
AAGCGACGTCACCGCTGATTGGCCCTGAGTCTTCGCTAGGTCCCGCCCCA
AAGAGGCAACATTGGGTGAAGATGAGCCAGCCTTCGCGTCTTGACCAGTC
AGCGTAGTCACTCGCTTCACGGAAGCCAACTGTCCAGCTAGAAGAGGCAG
CTGTTAGATTGTCACCCGGAATTTTCAATGAAAGGCCAAAACCTCAGCAC
TGAAGGGGCGGGAGGATCATTGAGGGCGGTGTTGTTTCCATGTGGAACGG
ACGAAGCGATTGTTACTTTGCTATTGGTAGGCAGAAGCCACGTGATTCTG
CCTTTCTTCAATTCCCACTCCCTTATAAGGGGTGCTATGTGCACCCCTTA
ACATTAACTTTGCTGAAAATCCCTACCCCAATACTGATCCCCC

NTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTCCTGGGAATGGGTAGGGTG
CTTGCTTATCATACAAAGCCATGGGAGCTCACACCCAGCACTGCATGAAC
TGCAGCGGCAGCGGCCCCTGTAATCTGGGCACTCAGGAGGTACAAATAGG
AAGATCAGAAGTTTAAGGTTATCTTCAACTACTGAGTGAATTTGAGGCTA
AGTGAGTTCCTGTCTCAAAAACAAAACAACAAACAACCCCCCCCCAATAA
AAACAACAAAAAAGCCCACATCTGAATTTCTCAAGAGGGTAATTGCTAGC
TCTGCAATACAATAAGAGAATTTATTTTTTTTAAAGATTTATTTATTATA
TGTAAGTACATTGTAGCTGTCTTCAGACAGCCTAGAAGAGGGCAACAGAT
CTCATTATGGATAGTTGTGAGCCACCATTTGGTTACTGGGATTTGAACTC
AGGACCTCTAGAAGAGCACTTTTAACCGCTGAGCCATCTCCCTGAGAATT
TAACTTCCCCAACAACTTTTCTTTTTTTTTTTTTAAGGATCTATTATAAC
ACCTAAGTACCCTGTCGCTTGCCCTCTTATATTCCCATATCAGGACGTCT
TACCCTCCTTACTGTATGGTTTGTGCCCCCTCCATTGCGTGTTTGCCCGC
CCATTTCGTTATTCTTCTCCCCCCTTTTTAAATAAACCAGTTCGCCTCCC
TCTCTTTATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_d10.b1 MSMg01no405_d10.b1 CHROMAT_FILE:
MSMg01no405_d10.b1 PHD_FILE: MSMg01no405_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:08 2005
         (509 letters)



>mm_chr15_103102895_103103803
          Length = 909

 Score =  909 bits (470), Expect = 0.0
 Identities = 485/490 (98%)
 Strand = Plus / Minus

                                                                       
Query: 20  ccctgcatgttctcttcaactttgccactgactcctgctctcttgccggcaaggcttcct 79
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 709 ccctgcatgttctcttcaactttgccaccgactcctgctctcttgccggcaaggcttcct 650

                                                                       
Query: 80  actctataccgcggctctagctcccattgtaggccacacttgcattgcacagatagcggg 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 actctataccgcggctctagctcccattgtaggccacacttgcattgcacagatagcggg 590

                                                                       
Query: 140 agctttggcccccgaggcctgcccagaaccctctcccggccccagctgatgagccccacc 199
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 589 agctttggcccccgaggcctgcccggaaccctctcccggccccagctgatgagccccacc 530

                                                                       
Query: 200 tcccggaccccctggacaccacaacggagccactggccctccagctcctaccaaaatcag 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcccggaccccctggacaccacaacggagccactggccctccagctcctaccaaaatcag 470

                                                                       
Query: 260 cgcctccatcttgtccgtagctgctgccgacgtggagtcgcacaagcgacgtcaccgctg 319
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cgcctccatcttgcccgtagctgctgccgacgtggagtcgcacaagcgacgtcaccgctg 410

                                                                       
Query: 320 attggccctgagtcttcgctaggtcccgccccaaagaggcaacattgggtgaagatgagc 379
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 409 attggccctgagtcttcgctaggtcccgcctcaaagaggcaacattgggtgaagatgagc 350

                                                                       
Query: 380 cagccttcgcgtcttgaccagtcagcgtagtcactcgcttcacggaagccaactgtccag 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cagccttcgcgtcttgaccagtcagcgtagtcactcgcttcacggaagccaactgtccag 290

                                                                       
Query: 440 ctagaagaggcagctgttagattgtcacccggaattttcaatgaaaggccaaaacctcag 499
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ccagaagaggcagctgttagattgtcacccggaattttcaatgaaaggccaaaacctcag 230

                     
Query: 500 cactgaaggg 509
           ||||||||||
Sbjct: 229 cactgaaggg 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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