Query= MSMg01no405_m06.b1 MSMg01no405_m06.b1 CHROMAT_FILE:
MSMg01no405_m06.b1 PHD_FILE: MSMg01no405_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:51 2005
(456 letters)
>mm_chr15_14942850_14943703
Length = 854
Score = 843 bits (436), Expect = 0.0
Identities = 448/452 (99%), Gaps = 2/452 (0%)
Strand = Plus / Plus
Query: 5 gaattccactttctctactgactcctagaatattcactacattactaacttcttgcacat 64
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactttc-cta-tgactcctagaatattcactacattactaacttcttgcacat 262
Query: 65 tttgtgacttacttcattgaatgtctggctgtatgccatgaaggtttctcacacaataca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttgtgacttacttcattgaatgtctggctgtatgccatgaaggtttctcacacaataca 322
Query: 125 gcacacttataaaggcaaaggacagtgcatttattgaaattaatattcaaaagaagaacc 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 gcacacttataaaggcaaaggacagtgcatttattgaaattaatcttcaaaagaagaacc 382
Query: 185 aggcactgaagaaaacttacatagagtgataaaatacattaaaaaccctggttttacttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggcactgaagaaaacttacatagagtgataaaatacattaaaaaccctggttttacttc 442
Query: 245 cagaaaaaaagagtaaaggatatttcatgctatcacccactccttcccctaacacactat 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 cagaaaaaaagagtaaaggatatttcatgctattacccactccttcccctaacacactat 502
Query: 305 tttcaaaattcactgggaaggaaacaaagttatttatgtcaacaatttcttccagtttgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttcaaaattcactgggaaggaaacaaagttatttatgtcaacaatttcttccagtttgg 562
Query: 365 taagaaaacaaagtacgatttattgaaattgattggtggaaatgtttataatgacaattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 taagaaaacaaagtacgatttattgaaattgattggtggaaatgtttataatgacaattt 622
Query: 425 tacttcaggacatgaagttacatttggggaca 456
||||||||||||||||||||||||||||||||
Sbjct: 623 tacttcaggacatgaagttacatttggggaca 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 854
Length adjustment: 10
Effective length of query: 446
Effective length of database: 844
Effective search space: 376424
Effective search space used: 376424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_m06.g1 MSMg01no405_m06.g1 CHROMAT_FILE:
MSMg01no405_m06.g1 PHD_FILE: MSMg01no405_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:51 2005
(369 letters)
>mm_chr15_15080198_15080966
Length = 769
Score = 706 bits (365), Expect = 0.0
Identities = 368/369 (99%)
Strand = Plus / Minus
Query: 1 cttggatttactcagtaaaagtgtactgcaaattatactctgatcccttcccacactaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cttggatttactcagtaaaagtgtactgcaaattatactctgatcccttcccacactaaa 656
Query: 61 taaatgtcataccattgataaaaatcacaatatacataagctattttgcacctatgtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 taaatgtcataccattgataaaaatcacaatatacataagctattttgcacctatgtaaa 596
Query: 121 ttaataataaaaataagatttatattcatttgtaaacttaggcttttttaaattcaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttaataataaaaataagatttatattcatttgtaaacttaggcttttttaaattcaagtg 536
Query: 181 atcaaggttattaaatatccccatatatatttatgtgtatctttgtgtctgtatacattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atcaaggttattaaatatccccatatatatttatgtgtatctttgtgtctgtatacattt 476
Query: 241 gtattatatatttgtttaataatatactacattgttaagaatagtaatagatcttctgtg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtattaaatatttgtttaataatatactacattgttaagaatagtaatagatcttctgtg 416
Query: 301 ttacagaatctatgtttttgcttcatttcttttataatgtttttggtaatacttcacact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttacagaatctatgtttttgcttcatttcttttataatgtttttggtaatacttcacact 356
Query: 361 actgttttt 369
|||||||||
Sbjct: 355 actgttttt 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
