BAC Information

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BAC

Clone NameMSMg01-406I19
Chromosome15 (Build37)
Map Location 83,631,705 - 83,631,941
singlet/doubletsinglet
Overlap geneMpped1
Upstream geneTcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1
Downstream gene4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406I19.T7 (MSMg01no406_i19.b1)MSMg01-406I19.TJ (MSMg01no406_i19.g1)
ACCAG504719AG504720
length751747
length of high quality
(start - end)
237 (79 - 315)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no406_i19.b1 PHD_FILE: MSMg01no406_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:54 2005CHROMAT_FILE: MSMg01no406_i19.g1 PHD_FILE: MSMg01no406_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGATAT
CCGCGGAATTCTCATCTGCCAGACAGGGTGCGAAGAGAAATATCTCGACA
AAACAAGAGTCTGCCACACGTTGCCTGGCACATGGCAAGTGTCTGGCCTG
CGGTGATCCTCACCCAGCCAAATAGAGCCTCTCATCTTTTGTCACTCATA
GCAAAGAGATAAAGCACTCACCTGGACATAAAGAACCATGAAGAAGGCAG
CCTTTAGCATGGCCAGGGAGACACCTGGCTGTTGCTGGCCTTGGCTACAC
ACTCCCCTACCCTAGCTTTCATGATTCTCCAGCCCAAATGAGACTGGATT
AAAATTTCCCATTTGAAAAAAAAATCAATATTTAAAATGCCAAGCTTGCC
AAGTGGAAGCAAAGCCTTGCTTGTAAATATTTGTCTCCCCTGGCATAGCC
AGGTCTTTCACTCGCTGCAGCTACCCACCTCATGGCCAGCCCCTGCTCCA
CAGTTCCCAGCCAGCTGCATTCGTGCACATCCTTTGACTGTAAAGGACTG
TAAATTCTGGTATCCGCAGTCTCAGTCACTGTGGTACCTTCCCCATGTTT
ATTTTATCAACTCATTCTTAAGTCCTCTTCTACAAGGATATGTAATGATC
TTTCTTTTTCTTTCCTACCCCATGTATTCCATATCAATCTTGCCCTTCCT
CCTTTTCCCAAGTGTCTTAAAACATTAATCCTCATCTTTATTATGATGCA
A
CCTCCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGGTTGTGATAACTCGGTGTGCCA
TCAAAAGGGTTATTCCACAAGTGCAGAGATCAGCTTGCCTCTGCCTTCCA
AGTGTTGGGATTAAAGGCATAAGTTACCACCTCTAGCCGCTTTCTTGCTT
CCTGTCTATCGAGGAAAAGAGAGCCCTAAATTCAGAGAAAGACTCTGTCT
CAAGAAATTAAGCAGAGAAAGGCAGATGAGGATACCCAATATCTTCTTTT
AGCCTCCACTTGCATTTGTTACACTCCCTCCCTGTATGCATGGACTCATA
TACCCACAAGCCCTCAACAATCAATCAATGACTGCATGGATCATTTCATC
ATATAATTTGCTAGATGGAGATGAGATAGAGGGTAGTTTAAAATTTTTTT
CAATAGATGTATGTGATGGTTTGAATATCCTTGTATAATAGAGATACACT
GTGAGGACCAGGTTGTGTGATTTTTTTAAGTTCTTCAAGCATATTCCATT
CTTCGCTCCTTATTCCCTTTTGTTTTCACAAACCCCCGTGTATTCTCTTG
TTGGAACTATCTTCTCCCCCTTTTAAGTTCATTAATCTTTTTCCTCTCTG
TTCCTACCACCCCTGCCACTTCGCACCCTCGTTTCTCCCGCATACCTCAT
CATGCTCCACTCTCTTATCTGTATTTCTCTGCTACTCCTTTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_i19.b1 MSMg01no406_i19.b1 CHROMAT_FILE:
MSMg01no406_i19.b1 PHD_FILE: MSMg01no406_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:54 2005
         (237 letters)



>mm_chr15_83631505_83632141
          Length = 637

 Score =  400 bits (207), Expect = e-116
 Identities = 230/239 (96%), Gaps = 4/239 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcgaagagaaatatctcgacaaaacaagagtctgccacac--gttgcctggcacatggc 58
           |||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||
Sbjct: 437 tgcgaagagaaatatctcgacaaaacaagagtctgccacacagg--gcctggcacatggc 380

                                                                       
Query: 59  aagtgtctggcctgcggtgatcctcacccagccaaatagagcctctcatcttttgtcact 118
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 379 aagtgtctggcctgcggtgatcctcacccagccaaatagagcctcttatcttttgtcact 320

                                                                       
Query: 119 catagcaaagagataaagcactcacctggacataaagaaccatgaagaaggcagccttta 178
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 319 catagcaaagaaataaagcactcacctggacataaagaaccatgaagaaggcagcccaga 260

                                                                      
Query: 179 gcatggccagggagacacctggctgttgctggccttggctacacactcccctaccctag 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcatggccagggagacacctggctgttgctggccttggctacacactcccctaccctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)