BAC Information

Click to search

BAC

Clone NameMSMg01-406K10
Chromosome15 (Build37)
Map Location 13,942,275 - 13,942,459
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh6, LOC100039907, LOC666686, LOC239338, LOC666708
Downstream geneLOC674819, LOC100040024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406K10.T7 (MSMg01no406_k10.b1)MSMg01-406K10.TJ (MSMg01no406_k10.g1)
ACCAG504795AG504796
length724743
length of high quality
(start - end)
189 (117 - 305)486 (75 - 560)
definitionCHROMAT_FILE: MSMg01no406_k10.b1 PHD_FILE: MSMg01no406_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:02 2005CHROMAT_FILE: MSMg01no406_k10.g1 PHD_FILE: MSMg01no406_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAAAATTTGGGCGCTAAACGAATCACATTCTAAACCAGCGCGGAANCN
NTATTTGCCTAAATAAGAGATTCTATAACTTTGCTGTGTATTATTTTACT
CACATATGTTGGGCCCTGCAAAAAAGGTGCTCTCCAGATCCTCTTTTGTA
AAAGTGAAATTCTCATTTAATAAAGTGTCAGTATTATGACCTAGTCTTTC
AAGTTTATCTCAACCTCTAAATATGAGAGTGCTTTGTATTATTTTTTAAA
GAGATGCTATCTTAGGAAGTTGTATCAATCCATAGCAACCACATAAAAAA
AGAATGTTTTTTANTTTCTTACGTACAAGAGAAGTTGTTGAGGCTACAAG
ACAGTAAGAAAAACTAAGTTACAAATTAGTCAATGTCTGGAGAATAATTA
TACATAATTTTTTTATATTTCCATGTACATAAAGAACTATGCAGGATTGC
AATCTGATGGGACCTTTGTCATGCTTGCTGAAGTTTTACCTCTCCTAATT
CAACATGTTTCATAATGAGGAGTCAATGAAAACACATTCATGGCCTTTCT
GGAAAGATCAAAGAGTATCAATGTTTTAACCACAACAAATTATCTTTAAT
AAAATGCAAACAATTTATCACCACGTGTTCCACCTGTTGTTTTTTTTGGA
TACTGTAGAGATATGGAATATCTGACCCACTCCTTGTGTTTAGTAGTGAG
TGAATAAAGAGTACCGCTTTCTTN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATGAACTCCTTAACATTGCAAGGA
AAATGCGATTTTTCTTGGCTATCCTACAAAGCTTGACTGTGATACTCTGT
TGCTGAAGATACCAAAATTTTGAATTTTAAAGACATTGAAAATTAAGGTA
ATATCTGGCTAAATATTTTAACATTAGTTGCTCTGCAAAGGTCTTTACAG
ACTACTGTTTTAGAAAATTAATTGATTGTCTCTCAGGTGTAAATGTTGCA
AGATACATATATTAACTGTCTTTTCAAGAAATAACAGATGGTAAACAGCT
ATGACACAAACATTATGGGAGTAACCACCCACCTTTTACTTGATTTTAAA
GCTTTCTCTACAAGGAGAGTAATTCATGAATGGTACCATTAACTTTTCTT
AAAACCTGTGGCTCACTTTGCCATAAAACCTAGGGGAAAGTTTAAAAGTA
TTATTTTGCAGAATGCACATAGTAACAAAGTCCCTAATTTCTTTCCTTTA
TGAACATATATTAGTACAATGTGTAAGGCTAATTTGTAAAGCTTCTATTT
TCTATACATAGTGATTAAAATAGGAATTGCACCTTGCCTCTAAGAGATTG
TGTAAAGACGATTTACTACCAAACCCTTTCCGTAATGTCTTATGTATTAT
TGCCAAACCACGTTTTGTATGCATTTGTTCCACTCCCCACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_k10.b1 MSMg01no406_k10.b1 CHROMAT_FILE:
MSMg01no406_k10.b1 PHD_FILE: MSMg01no406_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:02 2005
         (189 letters)



>mm_chr15_13942071_13942659
          Length = 589

 Score =  296 bits (153), Expect = 6e-85
 Identities = 177/185 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaaaaggtgctctccagatcctcttttgtaaaagtgaaattctcatttaataaagtgtca 64
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||  ||
Sbjct: 205 aaaaaggtgcactccagatcctcttttgtaagagtgaaattctcatttaataaagtccca 264

                                                                       
Query: 65  gtattatgacctagtctttcaagtttatctcaacctctaaatatgagagtgctttgtatt 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtattatgacctagtctttcaaatttatctcaacctctaaatatgagagtgctttgtatt 324

                                                                       
Query: 125 attttttaaagagatgctatcttaggaagttgtatcaatccatagcaaccacataaaaaa 184
           | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 325 agtttttaaagagatgctatcttaggaagttgtatcaatccacagcaaccacataaaaga 384

                
Query: 185 agaat 189
           |||||
Sbjct: 385 agaat 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)