BAC Information

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BAC

Clone NameMSMg01-406O11
Chromosome15 (Build37)
Map Location 51,524,257 - 51,524,498
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644, LOC100039662
Downstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406O11.T7 (MSMg01no406_o11.b1)MSMg01-406O11.TJ (MSMg01no406_o11.g1)
ACCAG504989AG504990
length677782
length of high quality
(start - end)
54 (209 - 262)241 (72 - 312)
definitionCHROMAT_FILE: MSMg01no406_o11.b1 PHD_FILE: MSMg01no406_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:23 2005CHROMAT_FILE: MSMg01no406_o11.g1 PHD_FILE: MSMg01no406_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATAATGGGCCGCAAAGAACACATTCTCATCGCGCGGAANCNTTTTTC
ANGACCGCACACAAGCACNNCAAGGCCGGGCGGNNGCATATTCACCAACC
ACAAAGNCNNNAAGAGAAANNAAAAGGAAATTCAGGAGACACNAAGNANG
GNCAAGAANACNNAAGAAGCGACACGCCAAGANNCAGCTAAGCAGAAAAC
TTTTTACGCATCCTGGCCACAGGCATCTTTTCTAAGTGGCAATTACCCGT
TGATAGGAAAAATTTTTTTTTCAACAAAGGAAGGGAAAGCGCAACAGGCA
AGACTATCCTTCCAATTTGGTGGTGCTGCTGTAGTCTTTCCACCCTCCTA
TGGAAAATTCTCATGTTCCTCTATGAAGAGCACATGAAGGGCAGATTTTA
AAGTTTAAGTCTACGTACTTGCGGGTACCTGAACCCATCTGAAAGATGAT
TGCATTAGCCAGTACTCTTCCTAAACAATTGATTTTGTCCTACACTATTC
TAACCTTCTTTATGAACATGGTTCACTCTCATCCTTCTGTCCCGGCACGA
TCCCTCCCTTTATTTTTTTATTTCTTACTGGGTTCAAAGCTGGTCTATGG
AGAAACTTGTTTTTCTGAACCTCCGTACATCGAATCTTGTCTGGCCTTTA
ATCTTTTAGTAACATAATAATTTATTT
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTATTCACCACATTAACGCTTTCTTACAG
TTTTAATGCCCAGTTCCTGGGGGTATAAGAAAGAGTCTGAGAGATGAAGC
AGGAGCTGACCTAAGAAGCCAAGTTCCTGCCAGGCTTGAAGTGAGGCAAT
GGTGTGAAGTGAGAATCAGAAATTATTACTCAATCCTTGGGAGAAACTGC
CACGGCCATCACTCCTTCCTTGTGGCAACATCTCTTGTTTGTTGTAATCC
TTTTGTAAAGTTTTTTTAAAATGAGAAGCCATGACATTATGCACGGGACC
TCCCAGCACTGTCCCAGCACAAGCACCTTCTTTAGAAGTGGGTTACAGTA
AGAAGCAGGAAGCTCCTTCTAGGCCCGTGGTAGAAATTTGATAGAAAGTT
CCTGAGTATCACAACTTGAATCTGGACTGCAGAACAAGCTGATTTGGTTA
TGGGCTGTTTCCCTCCCACGTCCCATATTTGGCGGGATATGGTTCGGATT
TCAAGTTACAACCGTCTAAATCATCCAAGACATCCTTTGCTTTCGGATAT
ACCCCCCTTGGCTGTTTTTAGTAACGAACGGCCCCGCACTTATCCTCTCC
TTTGTCTTTGTCCCTTTGATATCCCCCCCCTCTAATACCCCCTGTTACTA
TGCATTTTATCCTTGCCATCCCACACCATGCTCTCCTCTATTCATTTCTT
CTCTGGTATGTCCTTCTCTTCACACTTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_o11.g1 MSMg01no406_o11.g1 CHROMAT_FILE:
MSMg01no406_o11.g1 PHD_FILE: MSMg01no406_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:23 2005
         (241 letters)



>mm_chr15_51524057_51524698
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattcacca-cattaacgctttcttacagttttaatgcccagttcctgggggtataaga 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcaccaacattaacgctttcttacagttttaatgcccagttcctgggggtataaga 260

                                                                       
Query: 60  aagagtctgagagatgaagcaggagctgacctaagaagccaagttcctgccaggcttgaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagtctgagagatgaagcaggagctgacctaagaagccaagttcctgccaggcttgaa 320

                                                                       
Query: 120 gtgaggcaatggtgtgaagtgagaatcagaaattattactcaatccttgggagaaactgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaggcaatggtgtgaagtgagaatcagaaattattactcaatccttgggagaaactgc 380

                                                                       
Query: 180 cacggccatcactccttccttgtggcaacatctcttgtttgttgtaatccttttgtaaag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacggccatcactccttccttgtggcaacatctcttgtttgttgtaatccttttgtaaag 440

             
Query: 240 tt 241
           ||
Sbjct: 441 tt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space:   146856
Effective search space used:   146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)