Query= MSMg01no406_o19.b1 MSMg01no406_o19.b1 CHROMAT_FILE:
MSMg01no406_o19.b1 PHD_FILE: MSMg01no406_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:24 2005
(485 letters)
>mm_chr15_20516146_20517029
Length = 884
Score = 847 bits (438), Expect = 0.0
Identities = 471/486 (96%), Gaps = 10/486 (2%)
Strand = Plus / Minus
Query: 5 gaattctctggtt---acataccaaatatattaaaaaataaatcaacaatttcaatagat 61
|||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 698 gaattctctg--taaaacataccaaatatattaaaacataaatcaacaatttcaatagat 641
Query: 62 gtacccacagacaccaaaaaatgaataaaagaaaataacaaaagaaaacaaattgtaatc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtacccacagacaccaaaaaatgaataaaagaaaataacaaaagaaaacaaattgtaatc 581
Query: 122 aaaatatgtgtgggctgtgtgacactaagtttccagttcctttacatttgtagaaataat 181
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aaaacatgtgtgggctgtgtgacactaagtttccagttcctttacatttgtagaaataat 521
Query: 182 atcaagaaaggttaaatatttaatttatttggggtctgcaatgtttgcttcataaatact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atcaagaaaggttaaatatttaatttatttggggtctgcaatgtttgcttcataaatact 461
Query: 242 tattactttgtatattgtcaaaaccaaata--ttttattgaatgttttcctagaactgaa 299
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 460 tattactttgtatattgtcaaaatcaaataagt---attgaatgttttcctagaactgaa 404
Query: 300 tttatgcacattctgtgatctgttattgatttctatttctattgatgagttcacaggtaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttatgcacattctgtgatctgttattgatttctatttctattgatgagttcacaggtaa 344
Query: 360 tcattctgcattttgcataaggagggtgcagctgacacttcttagactcaaagacttcat 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcattctgcatttggcataaggagggtgcagctgacacttcttagactcaaagacttcat 284
Query: 420 gtcactttcaacaagggtaataatttaagtaagatgatctctgtctttaaaaatagtgca 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtcattttcaacaagggtaataatttaagtaagatgatctctgtctttaaaaatagtgca 224
Query: 480 ttatgg 485
||||||
Sbjct: 223 ttatgg 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space: 415150
Effective search space used: 415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_o19.g1 MSMg01no406_o19.g1 CHROMAT_FILE:
MSMg01no406_o19.g1 PHD_FILE: MSMg01no406_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:24 2005
(495 letters)
>mm_chr15_20384080_20384974
Length = 895
Score = 911 bits (471), Expect = 0.0
Identities = 489/495 (98%)
Strand = Plus / Plus
Query: 1 tctgctacatttggagctggagccatgggttccctccatgtgtactacttggttggtggt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tctgctacatttggagctggagccatgggttccctccatatgtactacttggttggtggt 260
Query: 61 ttagtccctgggagtgcagggctatggattggttgatacaggcacttctaatggcatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtccctgggagtgcagggctatggattggttgatacaggcacttctaatggcatgaa 320
Query: 121 aaccagtcagagatcttgcattcattggtggtcccatagagtataatagagaaccaaatt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaatcagagatcttgcattcattggtggtcccatagagtataatagagaaccaaatt 380
Query: 181 cactggtgtccagaaatatagatttgtagctaccatgggtttatactagtttgtggtatt 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cactggtgtccagaaatatagatttgtagctaccataggtttatactagtttgtggtatt 440
Query: 241 gctgtttttaaaataatcatatatttctagaaatataaaataattattttggtgcataat 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgttttaaaaataatcatatatttctagaaatataaaataattattttggtgcataat 500
Query: 301 attgtatattgataaatatttgttactggactttgcttttaacttctaatttatagcata 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtatattgatacatatttgttactggactttgcttttaacttctaatttatagcata 560
Query: 361 attgttttacttaaacagtgtttatattgaagtctatgttgttgtatcctggcagcaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgttttacttaaacagtgtttatattgaagtctatgttgttgtatcctggcagcaact 620
Query: 421 gcctgtattttatgtttcttgccttttgtgagtccctcaaaaggaccatgcactgctgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctgtattttatgtttcttgccttttgtgagtccctcaaaaggaccatgcactgctgac 680
Query: 481 ttgatgtacactatc 495
|||| ||||||||||
Sbjct: 681 ttgacgtacactatc 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
