Query= MSMg01no407_c11.b1 MSMg01no407_c11.b1 CHROMAT_FILE:
MSMg01no407_c11.b1 PHD_FILE: MSMg01no407_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:43 2005
(536 letters)
>mm_chr15_90432222_90433156
Length = 935
Score = 882 bits (456), Expect = 0.0
Identities = 499/520 (95%), Gaps = 13/520 (2%)
Strand = Plus / Plus
Query: 22 ataaaataagcccaatatgagtcgacttaggcatgtcactctcctccaagttcacacgct 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ataaaataagcccaatatgagtcgacttaggcatgtcactctcctccaagttcacacgct 281
Query: 82 atgtcatacttcagtcacagaaccagtttgccgttttgagcttccagatcctgcagtgtc 141
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 282 atgtcatacttcagtcacagaaccagtttgccgttttgagcttccagattctgcagtgtc 341
Query: 142 acgagacccactgctctgccactgtctggatgcacaaactgagagagcagagcgggtgtc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acgagacccactgctctgccactgtctggatgcacaaactgagagagcagagcgggtgtc 401
Query: 202 aggaagaagccccatgctccaggatagcctggatgctttctgagatcttcactatcctaa 261
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 402 aggaagaagccccatgctccaggatagcctggatgctttctgagatcttcgctatcctaa 461
Query: 262 cagctctgtttttt------agagctccatacaatgaatggcctaagggaagctctgtga 315
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cagctctg------cagggcagagctccatacaatgaatggcctaagggaagctctgtga 515
Query: 316 atgatgtacagacaccaaatatgacgtttcatttttttttcccagtaaaataagtctaca 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atgatgtacagacaccaaatatgacgtttcatttttttttcccagtaaaataagtctaca 575
Query: 376 aatctacttgttaaatgtacaaggtgtagtactgagttcactaaagtttcagaaaaaata 435
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 576 aatctacttgttaaatgtgcaaggtgtggtactgagttcactaaagtttcagaaaaaata 635
Query: 436 acttctcaaattaagaaagaaaaaaaaaagaagaatacaactcatgctacagataagtaa 495
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 636 acttctcaaattaagaaagaaaaaaaaa-gaagaagccaactcatgctacagataagtaa 694
Query: 496 actggtgtttgaagtaggcaacttgcttagaaccatgctg 535
|||||||||||| ||||||||||||||||||||| |||||
Sbjct: 695 actggtgtttgacgtaggcaacttgcttagaaccgtgctg 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_c11.g1 MSMg01no407_c11.g1 CHROMAT_FILE:
MSMg01no407_c11.g1 PHD_FILE: MSMg01no407_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:43 2005
(500 letters)
>mm_chr15_90647889_90648788
Length = 900
Score = 913 bits (472), Expect = 0.0
Identities = 493/500 (98%)
Strand = Plus / Minus
Query: 1 aattcactgccagactttgggtgaggtgctttgtccttcttttttcttatcatctcatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aattcactgccagactttgggtgaggtgctttgtccttcttttttcttatcatctcatcc 641
Query: 61 aaatgtttatcttccactgagcccttttctctccaccctttttccatgcgaaaggaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaatgtttatcttccactgagcccttttctctccaccctttttccatgcgaaaggaagca 581
Query: 121 ggtgttaggaagctcaattctcctcttccaaactgcctctactcatttaactttctgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggtgttaggaagctcaattctcctcttccaaactgcctctactcatttaactttctgtca 521
Query: 181 gtagaacatagcctgatctctacaaccatggaaactctggccagtcagagcatcatccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtagaacatagcctgatctctacaaccatggaaactctggccagtcagagcatcatccca 461
Query: 241 accactttttaagcaccaataagtgtttctaatcttttcatgactgtgcccaaatggacc 300
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 accacttttgaagcaccaataagtgtttctaatctttttgtgactgtgcccaaatggacc 401
Query: 301 taaaatgttgagtaagagataaggctcaggagaaaaggtgtcttaaacatatggtttctt 360
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taaaaagttgagtaagaaataaggctcaggagaaaaggtgtcttaaacatatggtttctt 341
Query: 361 cgaaggccagagtagtcagacagggatcactttctctcctctagagattccagttcttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cgaaggccagagtagtcagacagggatcactttctctcctctagagattccagttcttgc 281
Query: 421 ctctgtctccctccttgggattatcaatagaaattggcctttgctttccctggactccct 480
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctctgactacctccttgggattatcaatagaaattggcctttgctttccctggactccct 221
Query: 481 gctataatgcatcctcaaga 500
||||||||||||||||||||
Sbjct: 220 gctataatgcatcctcaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
