BAC Information

Click to search

BAC

Clone NameMSMg01-407K12
Chromosome15 (Build37)
Map Location 33,071,888 - 33,229,340
singlet/doubletdoublet
Overlap genePgcp
Upstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962, Sdc2
Downstream gene1700084J12Rik, Tspyl5, LOC675463, Mtdh, Laptm4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407K12.T7 (MSMg01no407_k12.b1)MSMg01-407K12.TJ (MSMg01no407_k12.g1)
ACCAG505562AG505563
length751744
length of high quality
(start - end)
639 (44 - 682)597 (72 - 668)
definitionCHROMAT_FILE: MSMg01no407_k12.b1 PHD_FILE: MSMg01no407_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:21 2005CHROMAT_FILE: MSMg01no407_k12.g1 PHD_FILE: MSMg01no407_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,228,705 - 33,229,340)(33,071,888 - 33,072,489)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTATTAGAAAATTATATATCTGTATACCCTCCTTATAAGACATG
TGATAGTACACATAAAAGATAAAATGGGCATATAAAAAGTGAACTTGAGA
GCTCCAATTAGGTTCTCAAATCTCATTAAAATTATAGTGCATTTTACAAA
AGTGACATAATTTGAACACAACTGAATATGTCCCATTTATCTACATAAAA
TACAGGCAATGTCTAAGCAAGTAAGTTCGAAATTTACTACGTGATTGCCA
CACATATCTCTAATGCCTTTAAAGCTAATCACCTCTGACTAGTTCTTTTC
TAAAGATATGAGGCTCTAATGTTGCTGAGGATTTTGAAATCTGCAAGACC
CATAGCAGTCTGGGACAAGAGGACAATAGGACAGTTATGTGTCTTCAGGA
GGAATGTGCTGAGTTTTACAGGTGCAAATAGCATATTGGCTAAATACACT
CAGGGTGCTTGGAGCTCAGGACTGTTTCAGAAGAAAGGATGTGGCCATTA
GAATGGATTGCATACAGAGCTGTTAAAGTTGCAGCCTCTTGCATCTGAAC
TTTTAAAAGTTTCTTTATTAGAGATGTTATTAAATATACTTTCTTTAATT
AGTAGAANAAACTTGAAAGGGGATGGAGGACAGAGAGGAGAACATGATTG
TGTAGGGGGAAAGGATTGAAAACTCTGAGGGTCAGCAGAAAGAATGGAAA
N
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAATTCAGTATTCATAGCAACTTTGTAG
AGCTGCTGTGAACTATAAGGCTCAGTCACATGTTGTTTTGGTGGCAAAGA
TGGTATTAAATATCTGTTGCACCACAAGTTTGACTAGATAAATCACTATT
TTTCAAATCGATATGGTCTTTTGCCAAGTATTTCTACTACATAGGTTTTA
TTTCTTTAGTTAATAAAATTTCACATACAGCAAATGGTTGGTGCTCAGTT
AATGTTTGTCAAGTGAATGAATGACTTGAGATAACTTGTTTTAGGTTTTT
TTTTCCTTTTAAGAAACATATGAATGGACCTAGGAATCAATGTTTTCTTT
CCAACTTAACCATAAAACATTAATAATGTCATAATTATTAGTGTGTGGTT
TTGTGCAGGTGCATATTCTATGGCTTGTGTGTGAATATCAAAGTACATTT
TTGAAGAGCTAGTTCTCTCCTGTTTTTACTTGGGATCCATGGATGGAGCT
TGAGTCATCAGGCTTGTATAGTAAATGCCTTGACCTAATAAGCCAACCTG
CTGACCCAGTAATGCAGGTAGTTTGTTCCGAGTTGCCTTATACTTGTGCC
ATTTGTAGCTCTGGAAATTTTTAAATGAAAAATAATTTGCTCTACAGATT
CTTTCCCTTATTACAGTCTGAAAAATTAATGCCCATCTGTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_k12.b1 MSMg01no407_k12.b1 CHROMAT_FILE:
MSMg01no407_k12.b1 PHD_FILE: MSMg01no407_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:21 2005
         (639 letters)



>mm_chr15_33228502_33229540
          Length = 1039

 Score = 1208 bits (625), Expect = 0.0
 Identities = 633/636 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgtattagaaaattatatatctgtataccctccttataagacatgtgatag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ggaattctttgtattagaaaattatatatctgtataccctccttataagacatgtgatag 780

                                                                       
Query: 64  tacacataaaagataaaatgggcatataaaaagtgaacttgagagctccaattaggttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 779 tacacataaaagataaaatgggcatataaaaagtgaacttgagagctccaattagcttct 720

                                                                       
Query: 124 caaatctcattaaaattatagtgcattttacaaaagtgacataatttgaacacaactgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 caaatctcattaaaattatagtgcattttacaaaagtgacataatttgaacacaactgaa 660

                                                                       
Query: 184 tatgtcccatttatctacataaaatacaggcaatgtctaagcaagtaagttcgaaattta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tatgtcccatttatctacataaaatacaggcaatgtctaagcaagtaagttcgaaattta 600

                                                                       
Query: 244 ctacgtgattgccacacatatctctaatgcctttaaagctaatcacctctgactagttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctacgtgattgccacacatatctctaatgcctttaaagctaatcacctctgactagttct 540

                                                                       
Query: 304 tttctaaagatatgaggctctaatgttgctgaggattttgaaatctgcaagacccatagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tttctaaagatatgaggctctaatgttgctgaggattttgaaatctgcaagacccatagc 480

                                                                       
Query: 364 agtctgggacaagaggacaataggacagttatgtgtcttcaggaggaatgtgctgagttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agtctgggacaagaggacaataggacagttatgtgtcttcaggaggaatgtgctgagttt 420

                                                                       
Query: 424 tacaggtgcaaatagcatattggctaaatacactcagggtgcttggagctcaggactgtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tacaggtgcaaatagcatattggctaaatacactcagggtgcttggagctcaggactgtt 360

                                                                       
Query: 484 tcagaagaaaggatgtggccattagaatggattgcatacagagctgttaaagttgcagcc 543
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 359 tcagaagaaaggatgtggccattagaatggattgcatacagagctgttgaagttgcagcc 300

                                                                       
Query: 544 tcttgcatctgaacttttaaaagtttctttattagagatgttattaaatatactttcttt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcttgcatctgaacttttaaaagtttctttattagagatgttattaaatatactttcttt 240

                                               
Query: 604 aattagtagaanaaacttgaaaggggatggaggaca 639
           ||||||||||| ||||||||||||||||||||||||
Sbjct: 239 aattagtagaaaaaacttgaaaggggatggaggaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no407_k12.g1 MSMg01no407_k12.g1 CHROMAT_FILE:
MSMg01no407_k12.g1 PHD_FILE: MSMg01no407_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:21 2005
         (597 letters)



>mm_chr15_33071688_33072689
          Length = 1002

 Score = 1118 bits (578), Expect = 0.0
 Identities = 594/602 (98%), Gaps = 5/602 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaattcagtattcatagcaactttgtagagctgctgtgaactataaggctcagtcacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaattcagtattcatagcaactttgtagagctgctgtgaactataaggctcagtcacat 260

                                                                       
Query: 61  gttgttttggtggcaaagatggtattaaatatctgttgcaccacaagtttgactagataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgttttggtggcaaagatggtattaaatatctgttgcaccacaagtttgactagataa 320

                                                                       
Query: 121 atcactatttttcaaatcgatatggtcttttgccaagtatttctactacataggttttat 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcactatttttcaaattgatatggtcttttgccaagtatttctactacataggttttat 380

                                                                       
Query: 181 ttctttagttaataaaatttcacatacagcaaatggttggtgctcagttaatgtttgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctttagttaataaaatttcacatacagcaaatggttggtgctcagttaatgtttgtca 440

                                                                       
Query: 241 agtgaatgaatgacttgagataacttgttttaggttttttttt-----ccttttaagaaa 295
           |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||
Sbjct: 441 agtgaatgaatgacttgagataacttgttttaggttttttttttttttccttttaagaaa 500

                                                                       
Query: 296 catatgaatggacctaggaatcaatgttttctttccaacttaaccataaaacattaataa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catatgaatggacctaggaatcaatgttttctttccaacttaaccataaaacattaataa 560

                                                                       
Query: 356 tgtcataattattagtgtgtggttttgtgcaggtgcatattctatggcttgtgtgtgaat 415
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 tgtcataattattagtgtgtggttttgtgcatgtgcatattctatggcttgtgtgtgaat 620

                                                                       
Query: 416 atcaaagtacatttttgaagagctagttctctcctgtttttacttgggatccatggatgg 475
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 atcaaagtacatttttgaagagctagttctctcctgtttttacctgggatccatggatgg 680

                                                                       
Query: 476 agcttgagtcatcaggcttgtatagtaaatgccttgacctaataagccaacctgctgacc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcttgagtcatcaggcttgtatagtaaatgccttgacctaataagccaacctgctgacc 740

                                                                       
Query: 536 cagtaatgcaggtagtttgttccgagttgccttatacttgtgccatttgtagctctggaa 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagtaatgcaggtagtttgttccgagttgccttatacttgtgccatttgtagctctggaa 800

             
Query: 596 at 597
           ||
Sbjct: 801 at 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1002
Length adjustment: 10
Effective length of query: 587
Effective length of database: 992
Effective search space:   582304
Effective search space used:   582304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)