Query= MSMg01no407_k12.b1 MSMg01no407_k12.b1 CHROMAT_FILE:
MSMg01no407_k12.b1 PHD_FILE: MSMg01no407_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:21 2005
(639 letters)
>mm_chr15_33228502_33229540
Length = 1039
Score = 1208 bits (625), Expect = 0.0
Identities = 633/636 (99%)
Strand = Plus / Minus
Query: 4 ggaattctttgtattagaaaattatatatctgtataccctccttataagacatgtgatag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ggaattctttgtattagaaaattatatatctgtataccctccttataagacatgtgatag 780
Query: 64 tacacataaaagataaaatgggcatataaaaagtgaacttgagagctccaattaggttct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 779 tacacataaaagataaaatgggcatataaaaagtgaacttgagagctccaattagcttct 720
Query: 124 caaatctcattaaaattatagtgcattttacaaaagtgacataatttgaacacaactgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 caaatctcattaaaattatagtgcattttacaaaagtgacataatttgaacacaactgaa 660
Query: 184 tatgtcccatttatctacataaaatacaggcaatgtctaagcaagtaagttcgaaattta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tatgtcccatttatctacataaaatacaggcaatgtctaagcaagtaagttcgaaattta 600
Query: 244 ctacgtgattgccacacatatctctaatgcctttaaagctaatcacctctgactagttct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctacgtgattgccacacatatctctaatgcctttaaagctaatcacctctgactagttct 540
Query: 304 tttctaaagatatgaggctctaatgttgctgaggattttgaaatctgcaagacccatagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tttctaaagatatgaggctctaatgttgctgaggattttgaaatctgcaagacccatagc 480
Query: 364 agtctgggacaagaggacaataggacagttatgtgtcttcaggaggaatgtgctgagttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agtctgggacaagaggacaataggacagttatgtgtcttcaggaggaatgtgctgagttt 420
Query: 424 tacaggtgcaaatagcatattggctaaatacactcagggtgcttggagctcaggactgtt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tacaggtgcaaatagcatattggctaaatacactcagggtgcttggagctcaggactgtt 360
Query: 484 tcagaagaaaggatgtggccattagaatggattgcatacagagctgttaaagttgcagcc 543
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 359 tcagaagaaaggatgtggccattagaatggattgcatacagagctgttgaagttgcagcc 300
Query: 544 tcttgcatctgaacttttaaaagtttctttattagagatgttattaaatatactttcttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcttgcatctgaacttttaaaagtttctttattagagatgttattaaatatactttcttt 240
Query: 604 aattagtagaanaaacttgaaaggggatggaggaca 639
||||||||||| ||||||||||||||||||||||||
Sbjct: 239 aattagtagaaaaaacttgaaaggggatggaggaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_k12.g1 MSMg01no407_k12.g1 CHROMAT_FILE:
MSMg01no407_k12.g1 PHD_FILE: MSMg01no407_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:21 2005
(597 letters)
>mm_chr15_33071688_33072689
Length = 1002
Score = 1118 bits (578), Expect = 0.0
Identities = 594/602 (98%), Gaps = 5/602 (0%)
Strand = Plus / Plus
Query: 1 ttaattcagtattcatagcaactttgtagagctgctgtgaactataaggctcagtcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaattcagtattcatagcaactttgtagagctgctgtgaactataaggctcagtcacat 260
Query: 61 gttgttttggtggcaaagatggtattaaatatctgttgcaccacaagtttgactagataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgttttggtggcaaagatggtattaaatatctgttgcaccacaagtttgactagataa 320
Query: 121 atcactatttttcaaatcgatatggtcttttgccaagtatttctactacataggttttat 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcactatttttcaaattgatatggtcttttgccaagtatttctactacataggttttat 380
Query: 181 ttctttagttaataaaatttcacatacagcaaatggttggtgctcagttaatgtttgtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctttagttaataaaatttcacatacagcaaatggttggtgctcagttaatgtttgtca 440
Query: 241 agtgaatgaatgacttgagataacttgttttaggttttttttt-----ccttttaagaaa 295
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 agtgaatgaatgacttgagataacttgttttaggttttttttttttttccttttaagaaa 500
Query: 296 catatgaatggacctaggaatcaatgttttctttccaacttaaccataaaacattaataa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catatgaatggacctaggaatcaatgttttctttccaacttaaccataaaacattaataa 560
Query: 356 tgtcataattattagtgtgtggttttgtgcaggtgcatattctatggcttgtgtgtgaat 415
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 tgtcataattattagtgtgtggttttgtgcatgtgcatattctatggcttgtgtgtgaat 620
Query: 416 atcaaagtacatttttgaagagctagttctctcctgtttttacttgggatccatggatgg 475
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 atcaaagtacatttttgaagagctagttctctcctgtttttacctgggatccatggatgg 680
Query: 476 agcttgagtcatcaggcttgtatagtaaatgccttgacctaataagccaacctgctgacc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcttgagtcatcaggcttgtatagtaaatgccttgacctaataagccaacctgctgacc 740
Query: 536 cagtaatgcaggtagtttgttccgagttgccttatacttgtgccatttgtagctctggaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagtaatgcaggtagtttgttccgagttgccttatacttgtgccatttgtagctctggaa 800
Query: 596 at 597
||
Sbjct: 801 at 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1002
Length adjustment: 10
Effective length of query: 587
Effective length of database: 992
Effective search space: 582304
Effective search space used: 582304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|