ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATACCCTGGTTTACTGTCGGTAAACCAGGGTATAATAAATACCTTTTG
CGGGAAGTGATGGCTAGGAATGGAAGCTCATTGACTAAGCACTCGGGGAC
TATATAGATATCTCATTAGCATAGAGAATTCTAGGATTTTATGCTATGTC
ACTAGTTGACTGGAACCGGGGTTTCATGGACAGGTAAAGCCTGCCCGGAG
CCAGTTCCAGTGCCTTCCATTCTCAATTATGAGATTCCTGAGGGTTTTTG
AACCTGCTCCAACATTGACAGTTCTTTCTAGGGCAAGGTTCACTTGTTCC
ACACTGATTCAAAATTTCTCTTAATATTTATGAATTTTAGCTGATGTACT
ATTATTCTCAATAAATCATTAAATCTCAGTGGAAACTATATGCCGTGACT
AATTGATTCAATTGTCTCTTAATTTCAAATAGGCATTTGCTACTATCATT
TTCATACATGTAATAATATACTAATACTTATTTCAGTACATGTTTTACAC
GTTTTACATACACTTCCCATGAATTAAAAATGTCAGGACTAGTTTCTAAT
TATAGTTATTAATTAGGGATAAAAATACCCCGAACATGGTCTTTATTTTC
CAATGATTTGTTCCGCTTCCTATCAATCCCTTTATACGGGAAGAACCAAA
TTTTTTTATTTCCCGGTTGGGAGGCTAATCATTTCCCTTTTGCAGGAAAT
ATCTAATTGTTGTTTTAT

TTACTTGTGGGTTGGGCCTGGNCGGCCGNCCTGNGTCCCTCGANCNTTTA
GGNTNACACTANTNGATTTTCTCCCGCGGTAATTCCCNGANACNGCCCNG
AGTATATATANGAGANCACCCTCNTCTCNGAAAATCCNGAAGNAANNGAG
AAAAGTAATAGATAGAAGGTAGGTAGTAGGTAGTAGGTAGGAGGTAGTAT
GTATTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNTN
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTNTTTTTTTTNTTTNN
NNNNNNNTTTTTTTTTTTTTNNNTTNTTTNNTTTTNNTTTTTTTTTTTNN
TTTTNNTTTTTTTTTTTTNTTTTTTNTTTNTTTTTTTTTTTTNTNNTNTT
TTTTTTTTTTTTTTTTTCCTTTTTTNTCTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTCCTTTTTCT
TCTTTTTTTTTTTTTCTCTTCCTCCTCTTTCCCCCCTTCCCCCCCTCCTT
TTCCCCCCTCTCTTTCCCCCTCCCTCTTCCTCCTCTCCCTTTCCCCCTTC
TCCTTCTTTCTTTTCTTCTCNCTTCCCCTCCCCCTCCCTCTCCTTTTCCC
CTCCTTCTCCTTCTTTTTCCCCTTCTTCTTCTCTCCCTCTCTTTCCCTTT
CTTCCTTCTTTCTCCCCCCCTCCCCTCTCTTTTTTTTTTCTCCTCTCTTC
TCCCCTTCTTCTCTCTCCTTTCTTTTCCCTCTCCTCTTTNTCTCTCCTCT
CTTCCTTTCTTTCTCCCTCTCCTTCTTCCTCTTCCTCCCTTTTCTCTCTT
CTTNCTCCCCTCCN

Query= MSMg01no407_n18.b1 MSMg01no407_n18.b1 CHROMAT_FILE:
MSMg01no407_n18.b1 PHD_FILE: MSMg01no407_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:38 2005
         (495 letters)



>mm_chr15_49643519_49644413
          Length = 895

 Score =  835 bits (432), Expect = 0.0
 Identities = 481/500 (96%), Gaps = 10/500 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataccctggtttactgtcggtaaaccagggtat-aataaataccttttgcggga 63
           ||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 874 gaatttatatcctggtttactctcggtaaaccagggtataaataaataccttttgcggga 815

                                                                       
Query: 64  agtgatggctaggaatggaagctcattgactaagcactcggggactatatagatatctca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 814 agtgatggctaggaatggaagctcattgactaagcactcggggactatataaatatctca 755

                                                                       
Query: 124 ttagcatagagaattctaggattttatgctatgtcactagttgac-tggaac-c-----g 176
           ||||||||||||||||||||||||||||||||||||||||||||| | |  | |     |
Sbjct: 754 ttagcatagagaattctaggattttatgctatgtcactagttgacatagttctcttagtg 695

                                                                       
Query: 177 gggtttcatggacaggtaaagcctgcccggagccagttccagtgccttccattctcaatt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gggtttcatggacaggtaaagcctgcccggagccagttccagtgccttccattctcaatt 635

                                                                       
Query: 237 atgagattcctgagggtttttgaacctgctccaacattga-cagttctttctagggcaag 295
           |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct: 634 atgagattcctgagggtttttgaacctgcttcaacatt-accagttctttctagggcaag 576

                                                                       
Query: 296 gttcacttgttccacactgattcaaaatttctcttaatatttatgaattttagctgatgt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gttcacttgttccacactgattcaaaatttctcttaatatttatgaattttagctgatgt 516

                                                                       
Query: 356 actattattctcaataaatcattaaatctcagtggaaactatatgccgtgactaattgat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 actattattctcaataaatcattaaatctcagtggaaactatatgccgtgactaattgat 456

                                                                       
Query: 416 tcaattgtctcttaatttcaaataggcatttgctactatcattttcatacatgtaataat 475
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcaattgtctattaatttcaaataggcatttgctactatcattttcatacatgtaataat 396

                               
Query: 476 atactaatacttatttcagt 495
           ||||||||||||||||||||
Sbjct: 395 atactaatacttatttcagt 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)