BAC Information

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BAC

Clone NameMSMg01-408E22
Chromosome15 (Build37)
Map Location 69,021,015 - 69,021,415
singlet/doubletsinglet
Overlap genenone
Upstream geneZfat1, LOC100041000, EG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408E22.T7 (MSMg01no408_e22.b1)MSMg01-408E22.TJ (MSMg01no408_e22.g1)
ACCAG506056AG506057
length883811
length of high quality
(start - end)		141 (38 - 178)401 (72 - 472)
definitionCHROMAT_FILE: MSMg01no408_e22.b1 PHD_FILE: MSMg01no408_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:15 2005CHROMAT_FILE: MSMg01no408_e22.g1 PHD_FILE: MSMg01no408_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGC
CCTCAAATTGTCTGTAACTGGACTGTTTGTTTGGGAAACTTAATTACTGC
TTCTATTTCCATACGTGTTATAGGGTTATAGATCTATTTAAATTTTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTAACATGNNCCCNCTTCCCCCAC
GTCCCCCCGCCCTCCTCTNCNTCCTTCCCCTCTCCTCCTCCCCCTCCTTT
TTCCCCCCCCCCCCTTCCCCTTCTCCCCCTCCCCTTTTTCCCTCCTCCCC
CCCCTCCCCCCCTTTTCTTTTTTTTNCCCCCTCTTCCTCCCCTCCCCCTC
TTTTTTTCCCTCCTCCTCCCCTCTCTCTCTCTCCCCCTCTTCTTTTTNTC
TCCTTTNCCCCCCCCCCCCCCCCCTTNCTTTCCTNTTTCTCTTCTTTCCT
CCCTCTCCTCCTCCTTTCTTCCCCTCCCTTCCTTCTCCTCCCCTCCTCTC
CTCCCCCTCCTTCTTCCCCCTCCCCTCTTCCCCCCCCTCCCTCTTCCCCT
CTTTTCCTCCCCCTCTCCTCCCCCTCTTCTTTCTCCCCCCTCCTCTCTTC
CCTCCCTCTCTCTCCCCCCTTCCCCCTCCTTTCTCCCTCCTCTCTCTTTC
TTTNCCCCCTCTTCTCCTTCTCCCTCCCCCCCCCTCCCTTCTCTCCCCCC
CTCTTCTTCCCCCCTCCCCTCCCCTTCCTTCCCCCCCCCTCTCTCCCCCC
TTCTTTTCCTCCTTCCCTCCCTCCCCCTCTCCCCTTCCCCNTCTTCTTCC
CCCCCTTCCCCTTCTTCTTTTCTTCCCTCCTCCTTTCCTCCCCCCTCTCC
CTCTCCTCCTCCTCTTCTTTTCTCTTCTCCTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCTTCCAAGGAAATCTGGTAGAAGGAGA
GAACAGACTCCTGGAAGTTGTCTTCTGACTGCCATGCAAGTGTGACATGA
ATGTGTTTTCCCCGAAAACACACTAATTAAAGTTAAAGTGTAATTTAAAA
CGTTTTGAATGACCTCCTATGCTGCCTTTAGAGATTCTTATAGTATATCT
TTATTTAAAAAATAAATAAAAATAAAAAGGCCTTTCTGGTAGAGCAACTC
TCTGTTGACTTTAAGGAGAGAAATGTGTCCCTTCAATACTCATATTTATC
TATTATGGAAGTTATAAGTAGATATAGAAGAAGAATGCAGAATGTTTAAA
ACAATGTATCCTTGTAGGTAGAANATGAATATCCAATATATACAATGAGC
TCAAGAAACTGGAATCCAGAAATTCAAATAACACCATTAAAAAATGGGGT
ACAGAGCTAAACAAAGAATTCTCAACTGAGGGATACAGAATGGCTGAGAA
GCACCTGAAAAAATGTTCAAAATTCTTAATCTTCCCGGAACTACCAACCC
AAACAACCCTGAAATTCCCCCCCCTTTCCCTCTAAAAGGAGTAAAATTAA
AAATTCCCGTGGCCCCAAAATTTTTCGTATAATTGGAAAAAAAAAAAAAA
CCCCTCCCCTTTGTGGGGGGAATAGGAACTCTGTATAACACCCTTGTAGA
ACAAATTTTGAAGTTTCTTTCTAAAATTTGGTATTAAATATTCTCCGGGT
ACCACCTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_e22.g1 MSMg01no408_e22.g1 CHROMAT_FILE:
MSMg01no408_e22.g1 PHD_FILE: MSMg01no408_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:15 2005
         (401 letters)



>mm_chr15_69020975_69021775
          Length = 801

 Score =  731 bits (378), Expect = 0.0
 Identities = 395/401 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccttccaaggaaatctggtagaaggagagaacagactcctggaagttgtcttctgactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 cccttccaaggaaatctggtagaaggagagaacagactcctggaagtcgtcttctgactg 382

                                                                       
Query: 61  ccatgcaagtgtgacatgaatgtgttttccccgaaaacacactaattaaagttaaagtgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ccatgcaagtgtgacatgaatgtgttttccccgaaaacacactaattaaaattaaagtgt 322

                                                                       
Query: 121 aatttaaaacgttttgaatgacctcctatgctgcctttagagattcttatagtatatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttaaaacgttttgaatgacctcctatgctgcctttagagattcttatagtatatctt 262

                                                                       
Query: 181 tatttaaaaaataaataaaaataaaaaggcctttctggtagagcaactctctgttgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tatttaaaaaataaataaaaataaaaaggcctttctggtagagcaactctctgttgactg 202

                                                                       
Query: 241 taaggagagaaatgtgtcccttcaatactcatatttatctattatggaagttataagtag 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 taaggagagaaatgtgtcccttcaatactcatatttgtctattatggaagttataagtag 142

                                                                       
Query: 301 atatagaagaagaatgcagaatgtttaaaacaatgtatccttgtaggtagaanatgaata 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 141 atatagaagaagaatgcagaatgtttaaaacaatgtatccttgtaggtagaaaatgaata 82

                                                    
Query: 361 tccaatatatacaatgagctcaagaaactggaatccagaaa 401
           ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 81  tccaatatatacaatgatctcaagaaactggaatccagaaa 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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