BAC Information

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BAC

Clone NameMSMg01-408E23
Chromosome15 (Build37)
Map Location 99,834,823 - 99,835,190
singlet/doubletsinglet
Overlap geneD330037H05Rik
Upstream geneEG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920
Downstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408E23.T7 (MSMg01no408_e23.b1)MSMg01-408E23.TJ (MSMg01no408_e23.g1)
ACCAG506058AG506059
length781792
length of high quality
(start - end)		372 (42 - 413)438 (70 - 507)
definitionCHROMAT_FILE: MSMg01no408_e23.b1 PHD_FILE: MSMg01no408_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:15 2005CHROMAT_FILE: MSMg01no408_e23.g1 PHD_FILE: MSMg01no408_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CGGTGAGAATGTGCAGGCACCTCTGAAGAGAAAGAGGTCTGGGTGAGACG
TTAAGGATCACAGTGGCGGCATTGTACGAAAAGTGAGGTTGTTTATGTGT
TCAAAGTACCCACAGTGAAATCTGAATAGATTTTTGTTTTTGCTAAAAGC
CTGAAATAAAAATATTTGTTGTGCACTTGGATGATTTTGAGAGTGTTTGT
GTGTGCAAGTGTGACTGCCTGTGCATGTGAACAGTTGATCACTGACGGCC
ACTACTTGCTTTTAGCACTGCTTGCATGGGAATTGTAGCTGATGTCTTGA
AGGATGGAATGTATGTCTCAGATGGGCTGTGGAAAGAATAAGAGAGACCA
AAAGTTAAAAAGTGATTCGGCAAAGATTATTGTCAGATATATATTGTTGA
GAAGAGCAAGAGAAAGGTGCTGCGGAGCTAGGAAAAATGAGCATGACTGT
AACACCAGGAGTGTGTGAACTTTGTTACTCCTTAATGCAGAAAACAGGAG
CCTACCATTTGTAAGCCCCCTTCCGCCAATAAGGATTTGATGTTTTAAAT
ATCTCGTATTTTTCCCTCTCTATAACACCTTATTTTCCCATTTTTTCTTC
CCCCCCCCTTCATTCTCTTCTTCTTTATTCTCTTTTCCCTCTTACACTCT
ATCTCTTCTTCCTTCCCCCCTCCCTTTTCCCTCTCCTCTTTTTTTTTTCC
ACCCTTCTCTCTTTATTTCCTTTTCTCCCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGATTTTGTGTGTGTGCTCACAGGCACGC
AAGAGCCTCCTGGAGAAGTAGGAAGGAGGCACGGATCCCCTGGAACTGCA
GTTACGGGATTGTGAGCGCCATGTGGGTGCTGGGAATTGAGCCTGAGTCC
TTGCAGGAACAGCAAGTGCTCTCACATCGGAGCATCTCTGCAGCTCCCAC
ATGAACCACTTAGAAAAGAACTGTAAATACGCTCACAATGCAGTCACTGT
TGTAACACTTTGTTTTTTTGTTTTTTGTTTTTTTTTTTTTTGGTTTTTCG
AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCAGTAG
CCCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTGCCTCC
CGAGTGCTGGTATTAAAGGCGTGCGGCCCCACGCCCGGCTAACACTTTCT
TATTAAAACACATCACTTGCAGTTTAGTATCTTTGACTAATCGTGCATGT
GTGGAAGTGCTGACTGTTATCTGACAGGAAGAAAGGGACTTGGAGTCCCC
TGGGGCCCCCTTCTTAGGACATGGTTCAAAAATTTTTTTTGTTGAGGTTA
ACCCCCTGGCCTGGTTTTTTAAAAAAAATTCTGTTTACGGCAATATTAAT
TTAAAAAAACACCTGTATGGGTGGTTTCAATGCACACATTAAGTTCTTTT
TTTGTAAACAAAATATTTAGTTTTGTTGGGGCTCTTCCCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_e23.b1 MSMg01no408_e23.b1 CHROMAT_FILE:
MSMg01no408_e23.b1 PHD_FILE: MSMg01no408_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:15 2005
         (372 letters)



>mm_chr15_99834619_99835390
          Length = 772

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcggtgagaatgtgcaggcacctctgaagagaaagaggtctgggtgagacgttaag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcggtgagaaggtgcaggcacctctgaagagaaagaggtctgggtgagacgttaag 264

                                                                       
Query: 65  gatcacagtggcggcattgtacgaaaagtgaggttgtttatgtgttcaaagtacccacag 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatcacagtggcggcattgtacaaaaagtgaggttgtttatgtgttcaaagtacccacag 324

                                                                       
Query: 125 tgaaatctgaatagatttttgtttttgctaaaagcctgaaataaaaatatttgttgtgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaaatctgaatagatttttgtttttgctaaaagcctgaaataaaaatatttgttgtgca 384

                                                                       
Query: 185 cttggatgattttgagagtgtttgtgtgtgcaagtgtgactgcctgtgcatgtgaacagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttggatgattttgagagtgtttgtgtgtgcaagtgtgactgcctgtgcatgtgaacagt 444

                                                                       
Query: 245 tgatcactgacggccactacttgcttttagcactgcttgcatgggaattgtagctgatgt 304
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 445 tgatcactgacggccactacttgcttttagcactgcttgcgtggaaattgtagctgatgt 504

                                                                       
Query: 305 cttgaaggatggaatgtatgtctcagatgggctgtggaaagaataagagagaccaaaagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgaaggatggaatgtatgtctcagatgggctgtggaaagaataagagagaccaaaagt 564

                   
Query: 365 taaaaagt 372
           ||||||||
Sbjct: 565 taaaaagt 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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