Query= MSMg01no408_l03.b1 MSMg01no408_l03.b1 CHROMAT_FILE:
MSMg01no408_l03.b1 PHD_FILE: MSMg01no408_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:45 2005
(291 letters)
>mm_chr15_16663553_16664243
Length = 691
Score = 482 bits (249), Expect = e-140
Identities = 265/275 (96%), Gaps = 9/275 (3%)
Strand = Plus / Minus
Query: 4 ggaattctaccatatccacgactgtagaacagacatacatctggtaaggattctaaaaaa 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggaattctaccatatcca-gactgtagaacagacatacatctggtaaggattctaaaaaa 439
Query: 64 acaaaacaaaacaaaactatcccttaaagaatgatcagggctaatattgcattttttaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 acaaaacaaaacaaaactatcccttaaagaatgatcagggctaatattgcattttttaaa 379
Query: 124 agtaatatctattttgtcattaactttgtaaaattgttgtttatttacttatttatttga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agtaatatctattttgtcattaactttgtaaaattgttgtttatttacttatttatttga 319
Query: 184 ggaagatagagaggaagcacattgttccacagcttgcctgtgtgcgtgtgtgtgtgtgtg 243
||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 318 ggaagatagagaggaagcacattgtgccacagcttgcctgtgtgc--------gtgtgtg 267
Query: 244 tgtgtgtgtgtatgcatgtgtttgtgtgtgtgtgt 278
|||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtgtgtgtgtatgcatgtgtttgtgtgtgtgtgt 232
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no408_l03.g1 MSMg01no408_l03.g1 CHROMAT_FILE:
MSMg01no408_l03.g1 PHD_FILE: MSMg01no408_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:45 2005
(548 letters)
>mm_chr15_16493930_16494877
Length = 948
Score = 980 bits (507), Expect = 0.0
Identities = 538/553 (97%), Gaps = 10/553 (1%)
Strand = Plus / Plus
Query: 1 tttttaggtgtgactgcagaaagaactttgggtttatacctctacaaatatcccagggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tttttaggtgtgactgcagaaagaactttgggtttatacctctacaaatatcccaggata 260
Query: 61 tttagagatgcactggaaatgatggttatccaaataaattatattccaccagtgagataa 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagagatgcactggaaatgatggttatccaaataaattatattccaccagtgagataa 320
Query: 121 aaattgactataaaactgaggatatttaatattctgtattgttatattcagtgcattcct 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 aaattgactataaaactgaggatattcaatattctgtattgttatattcagtgcattcct 380
Query: 181 ttaaggaatatgaaattattaagactgatagataaggttttaagaattgaatatcattat 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttaaggaatatgaaattattaagactgatagataaggttttaggaattgaatatcattat 440
Query: 241 gcatctctgcagcagtgcctctaacattgtctctctgaccttcctttccttgaatccttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatctctgcagcagtgcctctaacattgtctctctgaccttcctttccttgaatccttc 500
Query: 301 acatttcttgccttaagcatatatctaaaatggatatgatatgccattcattttaatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatttcttgccttaagcatatatctaaaatggatatgatatgccattcattttaatttt 560
Query: 361 gctgttatttgaaattcaatctgtggtcttctgaaagttccaacttcccttatgattttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgttatttgaaattcaatctgtggtcttctgaaagttccaacttcccttatgattttt 620
Query: 421 ctcacatctcttgtgccatcatgaatcctgtcatgtcaaaaataactagtttttttcccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 ctcacatctcttgtgccatcatgaatcctgtcatgtcaaaaataactagtt-----cccc 675
Query: 481 cct----gtttgtctgtaatctccatgtattttttt-attgctcaccaatttcctccaaa 535
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 676 cccccccgtttgtctgtaatctccatgtattttttttattgctcaccaatttcctccaaa 735
Query: 536 tcaaaagactcaa 548
|||||||||||||
Sbjct: 736 tcaaaagactcaa 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
