BAC Information

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BAC

Clone NameMSMg01-408N01
Chromosome15 (Build37)
Map Location 77,821,702 - 77,822,158
singlet/doubletsinglet
Overlap genenone
Upstream geneMb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7
Downstream geneCacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408N01.T7 (MSMg01no408_n01.b1)MSMg01-408N01.TJ (MSMg01no408_n01.g1)
ACCAG506446AG506447
length737752
length of high quality
(start - end)
470 (46 - 515)457 (74 - 530)
definitionCHROMAT_FILE: MSMg01no408_n01.b1 PHD_FILE: MSMg01no408_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:55 2005CHROMAT_FILE: MSMg01no408_n01.g1 PHD_FILE: MSMg01no408_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGATAGCCAGAGCTATGTGAAGAGACTCTGTCTCAATAAATAA
ATAATATAATAAATCTTGTTTGTTTTTGTTTGCTTAAGATGCTATTGCTC
TGGCAGTTAGAGAGATGGCTCAGCAGCTAAGAGCACTGTCTGCTCTTCCA
GAGGATCCAGGTTTGATCCCCAGCACCTACATGGCAGCTCACAATTGTAA
CTACAGTTCTAGGGACTCCAATGCCCTCTTCTGGTCTCTGTAGGCACTAG
GTCCGCACATATACGCACAGTCAAAGACATATAAAATAGAAATAAATAAT
TCTTTTTTTAAAAACATTTAAAAGATATTCTTTGGGGGTGGAGATCAGCA
CAGTAAGTAAGGTGCTTTGCCTAGCATGTGTGAGGCCCTGGGGTCTAGCA
CTGCATAAAACCAGGCCTACTGATGCACATCGATAATTCTAGCCCTTGGT
AGGTAGAGGCAGGAGGATCAGAAGTTCCAGATGGTCTTTGGTTATGTCTG
AGTTCAAGGCTAATGTCCGACCTTGTCAGAAATAAATAAATTAAATGCCC
TGACTGCCAAGCATTGTATAAAGTATAGATGGCTTCTGAATCCCTGTTGA
CCCTATGTCCCCTGTTATATCTATCATTCTGCCGATGATTTGGCGTTTTT
CCCCCTTTTCTCCCTTTTTCCCCTTTTCCTCCCCCTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGAACCGCTGTCCCAGCTCGGGTCA
TCCCATCTAAAGAAGTTCTCAGAGTTGAGGGATGATGGCCTTAAACCATA
GGCAGTAAGGTGTCCCAACATCCAAAGTCATGAATTCTTTCTCTTCAGCA
TACCTCAGTGCCTCCAGTAATGGGGGAGCTCACCCCCTCCAAAGGTGGCA
GAGGCCAGTGCCACACAGCTCTCTGACAAGTCCCTGAGGTCACTACCCAT
CCGTTTCCCTTCATGCTCCAGCAACACTGGTCCTTTCCAACATGACTGTC
CCCAATATTTGAAAGCAGAGATTATACCATTCTTGGGCTCGCCCCCTTTT
AACACCCCCTCGTCCTTGCATCAACATACCACTACTACCTTTTGTGTGCA
GCCTGAAACGGACATGATGCTGGGGTGTGCTCTGAAGGCTTTCTACAGAG
AGAATCAGAGGTTGGCAGGAATGGGGCAGGTCTTGTAGGACCTCCTCAGC
TTGGTAAAGTGCAATAAACGGTTTTGCGCGCTATCCCTTTTTGTATTCCA
CTTTTTCCTTATTCTCCTTTTCCTCTCTTTTCGCGCATTTCCTCCGCAAA
CACTTTTCCGTTTTCTTTCTTTTTTTCCTCTTTTTTCTCTCGTTTTCTTC
TTTTTATTTCACTTTTATTCTACCACTTATTCTTCCTTTTTCTCTTCCCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_n01.g1 MSMg01no408_n01.g1 CHROMAT_FILE:
MSMg01no408_n01.g1 PHD_FILE: MSMg01no408_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:55 2005
         (457 letters)



>mm_chr15_77821502_77822358
          Length = 857

 Score =  868 bits (449), Expect = 0.0
 Identities = 455/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaaccgctgtcccagctcgggtcatcccatctaaagaagttctcagagttgagggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cttgaaccgctgtcccagctcgggtcatcccatctaaagaagttctcagagttgagggat 598

                                                                       
Query: 61  gatggccttaaaccataggcagtaaggtgtcccaacatccaaagtcatgaattctttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gatggccttaaaccataggcagtaaggtgtcccaacatccaaagtcatgaattctttctc 538

                                                                       
Query: 121 ttcagcatacctcagtgcctccagtaatgggggagctcaccccctccaaaggtggcagag 180
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttcagcacccctcagtgcctccagtaatgggggagctcaccccctccaaaggtggcagag 478

                                                                       
Query: 181 gccagtgccacacagctctctgacaagtccctgaggtcactacccatccgtttcccttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gccagtgccacacagctctctgacaagtccctgaggtcactacccatccgtttcccttca 418

                                                                       
Query: 241 tgctccagcaacactggtcctttccaacatgactgtccccaatatttgaaagcagagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgctccagcaacactggtcctttccaacatgactgtccccaatatttgaaagcagagatt 358

                                                                       
Query: 301 ataccattcttgggctcgcccccttttaacaccccctcgtccttgcatcaacataccact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ataccattcttgggctcgcccccttttaacaccccctcgtccttgcatcaacataccact 298

                                                                       
Query: 361 actaccttttgtgtgcagcctgaaacggacatgatgctggggtgtgctctgaaggctttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 actaccttttgtgtgcagcctgaaacggacatgatgctggggtgtgctctgaaggctttc 238

                                                
Query: 421 tacagagagaatcagaggttggcaggaatggggcagg 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tacagagagaatcagaggttggcaggaatggggcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)