BAC Information

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BAC

Clone NameMSMg01-409D19
Chromosome15 (Build37)
Map Location 26,003,817 - 26,160,825
singlet/doubletdoublet
Overlap genenone
Upstream gene9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622
Downstream geneAK162044, Fbxl7, LOC622531, LOC625311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409D19.T7 (MSMg01no409_d19.b1)MSMg01-409D19.TJ (MSMg01no409_d19.g1)
ACCAG506769AG506770
length759723
length of high quality
(start - end)
477 (54 - 530)459 (56 - 514)
definitionCHROMAT_FILE: MSMg01no409_d19.b1 PHD_FILE: MSMg01no409_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:31 2005CHROMAT_FILE: MSMg01no409_d19.g1 PHD_FILE: MSMg01no409_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(26,160,353 - 26,160,825)(26,003,817 - 26,004,278)
sequence
NNNNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACATCAGAATGTAGCTTCCTGATATTGATATTCCCAC
TAGAATAAGGAAAAAGGCAATGCATGCTGTCCCTTATGCCACAGCTGTTC
CTGTTATGTGGCGGTGGCAAATGGCACTCTCTTCACACAAATGCTTAACT
CTATGGCTGTGGCTGCCTCTTTAAGATGTAGACATTATAACAGTTGTTCA
TTCCCAAGAGAGGGTAGTATAGGCCTATGGATGTTTGAGTATGCAAATAG
AAACTTTGTCCTCATAATTAAGATCACTTCCAAACCTTGTGCTAGTAATA
GGTCCTGATTGGTCTCCGGCCTCCCACTAACTAGCATTGGAGAATCCTCC
TAAGCTCCTGGGATTCAGTATTCCCTTAACTAAAATATTGGTCATTGTGG
TCCATACCAGATTTCAATTCTCCCAGTGTCTAACTTCCTTCCTCAAATCC
TGCTGTTAAATTCTTCAACAAAGGCTGAGCTCACAGTTCACGTTTCATTG
TTATCAATTCATTGCTACAACCTTTTCTCTATTGAAGAATGNAGGGTTCC
ACNAATAAACAAATGAATCCAGTTACAGTAGTGATGCTTATATTGCAGAA
AATGCTAATATGCTTCGCTCATTTTACAATGGCTTATACGAACTCCTTTA
CATTTAAAAAAGACAAAAAACCCTGGGTAAAATAAAAATAACACGATCTG
TCGCCAGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTAATGCTACTAAACTTACAGGATGCTTTATGCAGAATCTTCTCTG
TGTCTTCAGAGATAAGGATCCAGTCTTCTTCTGGGTATGGGATGAGAGCA
TCTTTCATGGGAGGGTCTCCTGGCAGCAGTAGATGGAGATCAGAGAATTC
TTTCCAGGTTTTATTACTTGCTGTGGGAGAGAAAGGGAAGGTCAGAGAGA
ACTTTATGTTTTGCTGTGTTTTTTTTTCCCAAATGCCAAGGTGCCCTCTT
TTCAAGAAGTAAATTAGTTACTTAGCGCACCGCAGCAACAAAATACCTAA
TAAGAAAAACTTAAATAAGGAAGCACTGGGGCCTGAGAGATGGCCCAGTG
GTAACAGCGCTTGTTTTTCCTGCAGACCAGATTTTGGTTCCCAGCAGTTG
TACTCAGCAGTTCACATTGCCTGTAACTGGGGGTGGTGATGGGGAGCCAA
TACCTTTTTCTTGTGTCTGTGGGGATCCCCCCNCTTGTGAACACACACTT
ACAAACACACTCACCCTCACATTCTCTCTCTTNCTCATATACTATTTCTC
TTACTTTTCTCCTCTTATAATTTCTTAAAAGATAGGGTTTTTTAGTCCTT
ATTTTTGGAGGAATGGGTCTTTTTTTGTGTGCCTGCAGTTTAGGGCTTTT
CTTCCCTCCCTCTGTCATCAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_d19.b1 MSMg01no409_d19.b1 CHROMAT_FILE:
MSMg01no409_d19.b1 PHD_FILE: MSMg01no409_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:31 2005
         (477 letters)



>mm_chr15_26160149_26161025
          Length = 877

 Score =  884 bits (457), Expect = 0.0
 Identities = 469/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatcagaatgtagcttcctgatattgatattcccactagaataaggaaaaagg 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaattgacatcagaatgtagcttcctgatattgatattcccactagaataaggaaaaagg 618

                                                                       
Query: 65  caatgcatgctgtcccttatgccacagctgttcctgttatgtggcggtggcaaatggcac 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caatgtatgctgtcccttatgccacagctgttcctgttatgtggcggtggcaaatggcac 558

                                                                       
Query: 125 tctcttcacacaaatgcttaactctatggctgtggctgcctctttaagatgtagacatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tctcttcacacaaatgcttaactctatggctgtggctgcctctttaagatgtagacatta 498

                                                                       
Query: 185 taacagttgttcattcccaagagagggtagtataggcctatggatgtttgagtatgcaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taacagttgttcattcccaagagagggtagtataggcctatggatgtttgagtatgcaaa 438

                                                                       
Query: 245 tagaaactttgtcctcataattaagatcacttccaaaccttgtgctagtaataggtcctg 304
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 437 tagaaactttgtcctcataattaagatcacttccaaaccttgtggtagtaatgggtcctg 378

                                                                       
Query: 305 attggtctccggcctcccactaactagcattggagaatcctcctaagctcctgggattca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attggtctccggcctcccactaactagcattggagaatcctcctaagctcctgggattca 318

                                                                       
Query: 365 gtattcccttaactaaaatattggtcattgtggtccataccagatttcaattctcccagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtattcccttaactaaaatattggtcattgtggtccataccagatttcaattctcccagt 258

                                                                
Query: 425 gtctaacttccttcctcaaatcctgctgttaaattcttcaacaaaggctgagc 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtctaacttccttcctcaaatcctgctgttaaattcttcaacaaaggctgagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no409_d19.g1 MSMg01no409_d19.g1 CHROMAT_FILE:
MSMg01no409_d19.g1 PHD_FILE: MSMg01no409_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:31 2005
         (459 letters)



>mm_chr15_26003617_26004478
          Length = 862

 Score =  795 bits (411), Expect = 0.0
 Identities = 449/463 (96%), Gaps = 5/463 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgctactaaacttacaggatgctttatgcagaatcttctctgtgtcttcagagataa 60
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 taatgctactaaactttcaggatgctttatgcagagtcttctctgtgtcttcagagataa 260

                                                                       
Query: 61  ggatccagtcttcttctgggtatgggatgagagcatctttcatgggagggtctcctggca 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatccagtcttcgtctgggtatgggatgagagcatctttcatgggagggtctcctggca 320

                                                                       
Query: 121 gcagtagatggagatcagagaattctttccaggttttattacttgctgtgggagagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gcagtagatggagatcagagaattctttccaggttttattacttgctgtgggatagaaag 380

                                                                       
Query: 181 ggaaggtcagagagaactttatgttttgctgtg---tttttttttcccaaatgccaaggt 237
           |||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||
Sbjct: 381 ggaaggtcagagagaactttatgttttgctgtgtttttttttttttccaaatgccaaggt 440

                                                                       
Query: 238 gccctcttttcaagaagtaaattagttacttagcgcaccgcagcaacaaaatacctaata 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccctcttttcaagaagtaaattagttacttagcgcaccgcagcaacaaaatacctaata 500

                                                                       
Query: 298 agaaaaacttaaataaggaagcactggggcctgagagatggcccagtggtaacagcgctt 357
           ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 501 agagaaacttaaataaggaagcactggggtctgagagatggcccagtggttacagcgctt 560

                                                                       
Query: 358 gtttttcctgcagaccagattttggttcccagcagttgtactcagcagttcacattgcct 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttttcctgcagaccagattttggttcccagcagttgtactcagcagttcacattgcct 620

                                                      
Query: 418 gtaactgggggtggtgat-ggggagccaatacctttttcttgt 459
           ||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 621 gtaactgggggtggt-attggggagccaatacccttttcttgt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 862
Length adjustment: 10
Effective length of query: 449
Effective length of database: 852
Effective search space:   382548
Effective search space used:   382548
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)