Query= MSMg01no409_j12.b1 MSMg01no409_j12.b1 CHROMAT_FILE:
MSMg01no409_j12.b1 PHD_FILE: MSMg01no409_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:01 2005
(274 letters)
>mm_chr15_58619117_58619791
Length = 675
Score = 495 bits (256), Expect = e-144
Identities = 268/272 (98%), Gaps = 1/272 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttgacat-tatcttatcttgatacagactctttgacatttcatttaccatttc 62
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggaattcttgacataaatcttatcttgatacagactctttgacatttcatttaccatttc 416
Query: 63 caaaccttaggcttaatattgacactattctataatagtgtctatatacctttctgattc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 caaaccttaggcttaatattgacactattctataatagtgtctatatacctttctgattc 356
Query: 123 attaatggaataaacgggtagattttaaagccacttagttttagattgaggtctgaagac 182
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 attaatggaataaacggatagattttaaagccacttagttttagattgaggtctgaagac 296
Query: 183 ttttatgaagagcttctatgtttgagatctgtttctccttcaggttttcctttctctcac 242
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 295 ttttatgaagagcttctatgtttgagaactgtttctccttcaggttttcctttctctcac 236
Query: 243 agatgtcactttatatgtgttcctagatgtac 274
||||||||||||||||||||||||||||||||
Sbjct: 235 agatgtcactttatatgtgttcctagatgtac 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space: 176490
Effective search space used: 176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no409_j12.g1 MSMg01no409_j12.g1 CHROMAT_FILE:
MSMg01no409_j12.g1 PHD_FILE: MSMg01no409_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:01 2005
(428 letters)
>mm_chr15_58489547_58490374
Length = 828
Score = 774 bits (400), Expect = 0.0
Identities = 421/428 (98%)
Strand = Plus / Plus
Query: 1 ataacttgggtataagttgaccttacatctctgctcattcaggcagccatgtcaaagtta 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataacttaggtataagttgaccttacatctctgctcattcaggcagccatgtcaaagtta 260
Query: 61 gcccaagtgttctgtcctcctcagcaaggggtcacctgaacaccagaagtggcaaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccaagtgttctgtcctcctcagcaaggggtcacctgaacaccagaagtggcaaaataa 320
Query: 121 tgggacttgatacaagaacttcacagcataattttgtaacagagatcagcaaggatctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggacttgatacaagaacttcacagcataattttgtaacagagatcagcaaggatctct 380
Query: 181 tggtttcttgggctgcaactcggacacggaaatgctatctgctttcctgggtactttaaa 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tggtttcttgggctgcaactcggacacggaaatgctatctgatttcctgggtactttaaa 440
Query: 241 tggaccataagtgtatgaaacactattcaggctgcagagatctgtaggtgagctatcatc 300
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaccataagtgtatgacacacaattcaggctgcagagatctgtaggtgagctatcatc 500
Query: 301 attatcataatcacatcatcaccatcattatgcagtagaatataaagaaactgctatggt 360
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 501 attatcataatcacatcatcaccatcatcatgcagtagaatacaaagaaactgctatggt 560
Query: 361 ccttttactctcaacctgagtgttccctgttgatacatactctgtttcaagaactacaga 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 ccttttactctcaacctgagtgttccctgttgatacgtactctgtttcaagaactacaga 620
Query: 421 acttggca 428
||||||||
Sbjct: 621 acttggca 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
