BAC Information

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BAC

Clone NameMSMg01-410J09
Chromosome15 (Build37)
Map Location 78,913,649 - 78,913,898
singlet/doubletsinglet
Overlap geneEif3s6ip
Upstream geneCacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54
Downstream gene1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410J09.T7 (MSMg01no410_j09.b1)MSMg01-410J09.TJ (MSMg01no410_j09.g1)
ACCAG507800AG507801
length776832
length of high quality
(start - end)
244 (83 - 326)75 (81 - 155)
definitionCHROMAT_FILE: MSMg01no410_j09.b1 PHD_FILE: MSMg01no410_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:22 2005CHROMAT_FILE: MSMg01no410_j09.g1 PHD_FILE: MSMg01no410_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAA
TCGCGCGGAATCCACATAGTTTCCCCCTATCTCAATTTANAAAAAAAAAG
AGCGTGCTGAGGAAGGGAGCCACTCCCACTGTGTCTAGCGTGCTGGCCTG
AAGGCTCCCAGGCTCTCACTGATCCTGGGCTCTATGGAATTAGAAAGCCC
TTAACTAAAGAACAGCAGCTAAGCTGAGGAATTATGCTTATCTTAAGAGG
GATGCAGCTTGTCCAGAGGAGTCTCCTCCTCTCTCAACAGGTCAGACAAC
ATTCTCACATCATGCCCACAGGCTGTATTATTGTATAAGCCAGGGCCAGG
GGGACCGAGCAAGGTGACCCTGGCCTGAGATTTGCACCATGAGAGAGGCA
CTGGTGCCTCCTTTACGGTATGGTGAAGGCCGCCACTACTCACCAACACT
CTGTACTGAGGCTCCCCGCTTTGTGACTACGTTCAAACAACATCATTCAC
TACTGATTTCTAACCTTTCTGTTGGCTGTTTGCCAGTATCCCCAGGACAC
GGTATTCCAGGTAGTAGCCATCACACTTTCTTACACTGCCATCACTTTAT
TCAACCCTCTCGCATCCCCTGCCTATTACTCCATCTTATTCCGCACTCCC
CTTTATTCTTTCTTCCCCCTTTCCCTCCTTCTCCAATACCTTCGCCCCTT
TCTTTACTGTCCTTCCCTATCCCCTCTCTTTTCTCCCCCCCCCCCTTCAC
CCCCTTTTTCCACCCCTTTTTCTTTN
NNNNNAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTCAGACCCCCATGCTGT
AGCAGGTACCTGATCCCCTGGACCTCTAGGCAGACGGGGGTGGCGGGGGT
AGGGGGGTGCGCTCCTCTCCTCTACCCTTGCGCACCCACTTTCCCTTTTC
TTTTCTTTCTCCCTCCGCTCTTGCTTTCCTCTTTTATCCTCCCCCTATTC
TCCCTCTTTTCCTCCTCTCGTTTCCTGTCATCTCCTCCTTTCCCTCTTCC
CTCTTCCCTCCTCCCCTCCTTCTTTTTTTTTTTCTCCCCCCTCGTTCTCC
CCCTTCCCTCCTTTTTTTTTTTTTCTCCTTCTTCTCTTCTTCTCCTTTCT
TTTCCTTTCCCCTCTTTTTTTCTTCCTTCCCCCCTTTCCTCTCTTCTTCT
TTCCTTTTTTTCTTTCCCTTTCCCTCCCTTTTTCTCCTTCTCCCCCCCTT
CCTCCTTCCTTCTCTCCTTTCCTTCCTCTCCTCTTTTCCTTCTTTCCTTT
TTCCTCCCTTTCCCTTTCCTCCTCCTTTTCCCTCTTTTCTCTTCCTCCCC
TCCCCTTTTCCCTCTCTCCTCCCCTTTCCTTTCCCCCTCCTTTCCCTTTT
TTCTTTCCTCTTTCTCCCCCTCTCTTTTCCTTTTCCTTTTTTCCCCTTAC
TTCTCCCTCCTTTTCCCCCTTTTTCCCCTCTTCCTCCTTTTCCCTTTCCT
CTCCCCCCCTCTCCTTTTCTCCCCCCCTTTCTCCTCCCTTTTTTCGCCTC
TCTTTCCCTTTTCTCCTTCCCCTCTTTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_j09.b1 MSMg01no410_j09.b1 CHROMAT_FILE:
MSMg01no410_j09.b1 PHD_FILE: MSMg01no410_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:22 2005
         (244 letters)



>mm_chr15_78913449_78914099
          Length = 651

 Score =  431 bits (223), Expect = e-125
 Identities = 240/250 (96%), Gaps = 7/250 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatttanaaaaaaaaagagcgtgctgaggaagggagccactcccactgtgtctagcgtg 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caatttaaaaaaaaaaagagcgtgctgaggaagggagccactcccactgtgtctagcgtg 391

                                                                       
Query: 61  ctggcctgaaggctcccaggctctcactgatcctgggctctatggaattagaaagccctt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctggcctgaaggctcccagtctctcactgatcctgggctctatggaattagaaagccctt 331

                                                                       
Query: 121 aactaaagaacagcagctaagctgaggaattatgcttatcttaagagggatgcagcttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 330 aactaaagaacagcagctaagctgaggaattatgcttatcttaagagggatgcagcttgg 271

                                                                       
Query: 181 ccagaggagtctcctcctctctc-------aacaggtcagacaacattctcacatcatgc 233
           |||||||||||||||||||||||       ||||||||||||||||||||||||||||||
Sbjct: 270 ccagaggagtctcctcctctctcccgagtcaacaggtcagacaacattctcacatcatgc 211

                     
Query: 234 ccacaggctg 243
           ||||||||||
Sbjct: 210 ccacaggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 651
Length adjustment: 9
Effective length of query: 235
Effective length of database: 642
Effective search space:   150870
Effective search space used:   150870
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)