BAC Information

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BAC

Clone NameMSMg01-411G03
Chromosome15 (Build37)
Map Location 30,102,000 - 30,102,244
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382975
Downstream geneCtnnd2, 9630009A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411G03.T7 (MSMg01no411_g03.b1)MSMg01-411G03.TJ (MSMg01no411_g03.g1)
ACCAG508407AG508408
length751875
length of high quality
(start - end)
513 (49 - 561)245 (160 - 404)
definitionCHROMAT_FILE: MSMg01no411_g03.b1 PHD_FILE: MSMg01no411_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:24 2005CHROMAT_FILE: MSMg01no411_g03.g1 PHD_FILE: MSMg01no411_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATACTAGTCC
CCTATCCGATTTGGGATAGGTAAAGATCCATTCCCAATCTGTTGGTGGAC
TTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTT
CTGAGGTCTCATTTATCGATTCTTGATCTTATAGCACAAGCCATTGTTGT
TCTATTCAGGAATTTTTCCCCTGTATCCATATCTTCGAGGCTTTTCCCTA
CTTTCTTCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTA
ATCCACTTAGATTTGACCTTACTACAAGGAGATAGAAATGGATCAATTCG
CATTCTTCCACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAA
TGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCCAAGATCAAG
TGACCATATGTGTGCGGATTCTTCTCTGGGTCTTCCACTCTGTTCCATTG
GTCTATCTGTCTGTCTCTAACCAGTACCATGCCCGTTTGATCACCATTGC
TCTGTTTTTTTTTTTTATTTTTGCCTGCCGTTTCCCCCACAGTCTCTTTC
ATCCTTTGCCACCCGTTTCGCTCCCCTCTGTTTTTCGTTTTCCTATAGAT
G
GTNTTAGTGNAGAGGAGAGAGNTGAGGGGGAGNAGGGGAGTGAGGAGAGA
GNAGAGCGAGGNGGGNNNNGGTGTGAGGAGNCCCAATGATAXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCACTTCTGGTTTTCGCGGCGGCAGCAACAGCAGCAGAGATG
GGAGGAGGCGGCTCAGGTTGGGAGAGGGCCGCGCATCCCCGGGAACGGAC
AGCACCCGAGCTAGAGCCTACGTGGAGAGTTGATTCTGCGGGGCAGATGT
TGGTCTGCAAAGGGGCAGCGATTGAGGGGTTTTAGAGTAGCTTGTGAGTT
AAGGAGAGCACCGGGCCAGCCATGCAAGCTAGTGGATGGGGGTGGATGTT
CTTGTTTTTTCTAGGGNCCCAAAGCCCAGAACGCATGACATCTTGTGAAA
GGTTCCTTCATAGTGTCGGGGCCCCATCTCTTCCTTCTCCTGTTCTGCAC
ATCGCTTATGCCCACTCATCCTGGTCCCCCCTTTCGTATTCTGAGCAAAC
TTCTTACTCCGACATATCTTTGCCGCCTCCCCAGTTCCTCTGATTTCCCC
CCGCTCTTCCTGGTTCCTTTCATTCCCCTTTCTTTCCCCGTATGCCCTCC
TCCACCGGTTCCCTTCTCCCCTTTCCCCCGCCTTTCGCTCTTTTTTTCCC
CGTCTTGTCCCTCTTTTCCCCTCCTCTATCCCGCTCTCCCTTTCCCTTTT
GATTTCCCCTCCCACCTTCTTCCGCCCCCATTTCCCCCCTTCATTCGTCC
CCCCCTACAAGCGCACATCTGCCCTAATTTGCCCCCCGCCTCGTTCGCGC
CCTTCTCTCTTCTCCTCCTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_g03.g1 MSMg01no411_g03.g1 CHROMAT_FILE:
MSMg01no411_g03.g1 PHD_FILE: MSMg01no411_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:24 2005
         (245 letters)



>mm_chr15_30101800_30102444
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttctggttttcgcggcggcagcaacagcagcagagatgggaggaggcggctcaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacttctggttttcgcggcggcagcaacagcagcagagatgggaggaggcggctcaggtt 386

                                                                       
Query: 61  gggagagggccgcgcatccccgggaacggacagcacccgagctagagcctacgtggagag 120
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 385 gggagagggccgcgcatccccgggaacagacagcacccgagatagagcctacgcggagag 326

                                                                       
Query: 121 ttgattctgcggggcagatgttggtctgcaaaggggcagcgattgaggggttttagagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgattctgcggggcagatgttggtctgcaaaggggcagcgattgaggggttttagagta 266

                                                                       
Query: 181 gcttgtgagttaaggagagcaccgggccagccatgcaagctagtggatgggggtggatgt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 gcttgtgagttaaggagagcaccgggccagccatgaaagctagtggatgggggtggatgt 206

                
Query: 241 tcttg 245
           |||||
Sbjct: 205 tcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)