BAC Information

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BAC

Clone NameMSMg01-412L14
Chromosome15 (Build37)
Map Location 14,354,777 - 14,595,182
singlet/doubletdoublet
Overlap geneLOC674819
Upstream geneLOC239338, LOC666708
Downstream geneLOC100040024, LOC100040033, LOC100040046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412L14.T7 (MSMg01no412_l14.b1)MSMg01-412L14.TJ (MSMg01no412_l14.g1)
ACCAG509427AG509428
length713731
length of high quality
(start - end)		571 (75 - 645)451 (86 - 536)
definitionCHROMAT_FILE: MSMg01no412_l14.b1 PHD_FILE: MSMg01no412_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:11 2005CHROMAT_FILE: MSMg01no412_l14.g1 PHD_FILE: MSMg01no412_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,594,640 - 14,595,182)(14,354,777 - 14,355,190)
sequence
CCCCCCCAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATCTGTGACACAGTTGCTGTTAGTTTCATGAAAGTA
ATATGAATTTCTATTGTTAAATTAACATATTTTTGTGATCCATTCTGCAT
TGGAATAAGAGCTAAGCTGTTTTGGCATATAGCAATGCAGTTCTGGGCTG
TCCTGTTCTAAGCATCTGTCAGTACATGGATAATATCATTCCTTATACAC
ATAAAAATGCACAAAAGCATGATTAATGAATTCTTATTTGATACATATTT
TATAATCCAGTACAGTTTTTCAAAGATTTAATATTGGTTGAAATCACACT
TCTGGAGAGAGGGGACAAATTCATTTTTCTTTCTTTTATCATCTTTTATT
TTCTATTTATTAATTAATTATTTCATTTATTTATATCCCAAATCCCCCCA
CCTAAAACCCTCTTACAGAGTTCTTCCTCCCACCCCCCCTCCTCTTTGCC
TTGGAAAGGGTACCCAGGGATATCTTCCCACCCTGGCCCATTAAGTCTTT
ACAGGATTAGGCACATTCTCTTTCAATAAGAAAAGACAAATCAGACCTCT
GCTACATTAGTGTCAGGAGCCTTGGACCAGTCGTTCTATGCTCTTTAATT
GGTGGCTCTGATTCTGGGGCCTCCCACTGGTTGAGATTAGCTGATATAGT
TGTTCTCCTATGG

TCTAAATGCACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGAATTCTGGA
AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA
AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA
AAGGAAAGGAAAGGAAAGGAGTGTGTGTGAACTTACACTTCTTAGAAAGA
GTCCACTACTAGCCCACTACTTTGCGAACATATACCTGAGCATCTCTTTC
TCACTCTCTTATTTAAAAAGGTTCACTATGTATTCCTTTAATAACCACAT
TTCTTCCTACAATGTAGTTGCTGTCTAGCTTCTTGCTAAGGAAGTCAACT
TAATTCATTATTTAAAGACTCAAAAAACCATAACTACTTAGGAGCTATAT
TTATATTCTTCAATTCACTGAGAAACATAAGAGACTGACAGATGCAATTT
TAAGATGACGTATTTTGATAGAAAAGGAGATATAAAAAGAACCTAGAGAA
GAAGTCATTCCTAGCTAGGGAATAAAATGAATTCTGCAGGAGCAATGATC
TTAAGTTCTTCTGTTTGAGCACGGGGAATTATTGTATACCTGTACCCAAC
CGAGACCCTCTCTTATTCTTGTGGTACAACACTTGCTTACTCCAACGTTA
TAAAATTATATCTATCCCTTATAGATGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_l14.b1 MSMg01no412_l14.b1 CHROMAT_FILE:
MSMg01no412_l14.b1 PHD_FILE: MSMg01no412_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:11 2005
         (571 letters)



>mm_chr15_14594640_14595610
          Length = 971

 Score = 1004 bits (519), Expect = 0.0
 Identities = 537/543 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttgctgttagtttcatgaaagtaatatgaatttctattgttaaattaacatattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cagttgctgttagtttcatgaaagtaatatgaatttctattgttaaattaacatattttt 484

                                                                       
Query: 61  gtgatccattctgcattggaataagagctaagctgttttggcatatagcaatgcagttct 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 483 gtgatccattctgcattggaataagatctaagctgttttggcatatagcaatgcagttct 424

                                                                       
Query: 121 gggctgtcctgttctaagcatctgtcagtacatggataatatcattccttatacacataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gggctgtcctgttctaagcatctgtcagtacatggataatatcattccttatacacataa 364

                                                                       
Query: 181 aaatgcacaaaagcatgattaatgaattcttatttgatacatattttataatccagtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaatgcacaaaagcatgattaatgaattcttatttgatacatattttataatccagtaca 304

                                                                       
Query: 241 gtttttcaaagatttaatattggttgaaatcacacttctggagagaggggacaaattcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtttttcaaagatttaatattggttgaaatcacacttctggagagaggggacaaattcat 244

                                                                       
Query: 301 ttttctttcttttatcatcttttattttctatttattaattaattatttcatttatttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttttctttcttttatcatcttttattttctatttattaattaattatttcatttatttat 184

                                                                       
Query: 361 atcccaaatccccccacctaaaaccctcttacagagttcttcctcccaccccccctcctc 420
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 183 atcccaaatccccccacctaaaaccctcttacagtgttcttcctcccatcccccctcctc 124

                                                                       
Query: 421 tttgccttggaaagggtacccagggatatcttcccaccctggcccattaagtctttacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tttgccttggaaagggtacccagggatatcttcccaccctggcccattaagtctttacag 64

                                                                       
Query: 481 gattaggcacattctctttcaataagaaaagacaaatcagacctctgctacattagtgtc 540
           |||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||
Sbjct: 63  gattaggcacattctctttcaataagaacagacaaatcagatctctgctacactagtgtc 4

              
Query: 541 agg 543
           |||
Sbjct: 3   agg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no412_l14.g1 MSMg01no412_l14.g1 CHROMAT_FILE:
MSMg01no412_l14.g1 PHD_FILE: MSMg01no412_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:11 2005
         (451 letters)



>mm_chr15_14354540_14355390
          Length = 851

 Score =  785 bits (406), Expect = 0.0
 Identities = 412/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 38  ggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaa 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaa 297

                                                                       
Query: 98  ggaaaggaaaggaaaggaaaggaaaggaaaggaaaggagtgtgtgtgaacttacacttct 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggaaaggaaaggaaaggaaaggaaaggaaaggaaaggagtgtgtgtgaacttacacttct 357

                                                                       
Query: 158 tagaaagagtccactactagcccactactttgcgaacatatacctgagcatctctttctc 217
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 358 tagaaagagtccactactagcccactactttgcaaacatatacctgagcatctctttctc 417

                                                                       
Query: 218 actctcttatttaaaaaggttcactatgtattcctttaataaccacatttcttcctacaa 277
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 418 actctcttatttaaaaaggttcactatgtagtcctttaataaccacatttcttcctacaa 477

                                                                       
Query: 278 tgtagttgctgtctagcttcttgctaaggaagtcaacttaattcattatttaaagactca 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgtagttgctgtctagcttcttgctaaggaagtcaacttaattcattatttaaagactca 537

                                                                       
Query: 338 aaaaaccataactacttaggagctatatttatattcttcaattcactgagaaacataaga 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aaaaaccataactacttaggagctatatttatattcttcaattcactgagaaacataaga 597

                                                                 
Query: 398 gactgacagatgcaattttaagatgacgtattttgatagaaaaggagatataaa 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gactgacagatgcaattttaagatgacgtattttgatagaaaaggagatataaa 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 133
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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