BAC Information

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BAC

Clone NameMSMg01-412M24
Chromosome15 (Build37)
Map Location 78,296,544 - 78,524,055
singlet/doubletdoublet
Overlap geneTmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62
Upstream gene9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17
Downstream geneMfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412M24.T7 (MSMg01no412_m24.b1)MSMg01-412M24.TJ (MSMg01no412_m24.g1)
ACCAG509495AG509496
length860783
length of high quality
(start - end)		214 (47 - 260)381 (75 - 455)
definitionCHROMAT_FILE: MSMg01no412_m24.b1 PHD_FILE: MSMg01no412_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:18 2005CHROMAT_FILE: MSMg01no412_m24.g1 PHD_FILE: MSMg01no412_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,523,848 - 78,524,055)(78,296,544 - 78,296,924)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGGGTAGGTCACCAGGTATGAATAGATGCTAGGGTTAGAGGCAG
AGATGCTTACCAGAGGGGAGCATGAGGAAGGCCCGGAGGAGAACCGTAGA
TTCAGTGTCTTCTAGCAGTAGGGGACACGTCAGGCGTGCAAGAGCTGTGA
TGTGGGTGTGGAGTTTCAAGACCAAACATGCAAGGGGAGAACAGAGGGAT
TGGGGGTGTTTTGTCATTCCTGCCCCCCCCTTTCCTCTCCTTCTTCTTTT
TTTTGTTTCACCCCGGAGGATTTTTGATCGTTTCCCACACCGTTATTTTC
CTTCCCCTTCTTCTTTTTTTTTTCCCCCCCCCCCTTCCCGGGTGTTTCTC
CTTTTATTTCTATTTTCCCCCTTCCCATTCCTCTTTCCTTTTTTCCCCTT
TCTTTTCCCTCCTTATCATCTCCCCATCCCCCCTCCCTCTTTTTACTTTT
CTTTCCGCCTCCCCCTTTTCCTTTTCTTTTTTCCTTCCCCTCCCTATCTC
TTTCCCTTTTTTTTCCCCCTTCTCTCCCTTTTTTCCCCTTTTTTTCGTCC
GCACCCCACTTTTTTCCTCCCTTCATCTATTTTCCTGCATGTCTCTTTTT
TTTATCCCCCTTTTTTCCCACCCTTTACCCCTCTCTCCCCCTCTCTTCTT
TTCTTTTCTTCTCTCTTTTGTCCCCATTCCTTTCTGTTTTTCACGTCTTC
TTCTTCTCTCTTATTTCCTTTCTTCTCCCTCTGCTTTTCCTGCTATACCC
CCCTCTCCTCTCTCTACTTCTCTTCACCCTCTTTTATTCTTCTCCTCCTC
CCCCTTCCCC

NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCTAGCCTCCTAGATGGGCTTTCTG
CCTCCTGTCCCCTCCTCTATCCCATCCTCCACATTGTCACCCCAAAGATC
TCCTGACTCCTGCCCTCATCCACTGGGTCTGAATCCTTCCATGGCTCCCA
ACAACCACACCATGACGCCCAAGCCTGCTTACCGTCTCTTGTCACACACA
ACAGCCTTTATTGAAGCCTGTGAGACCTTAGCCTAGTGCCACCACACTGA
GGCTGGGTAGCATGTGGGAGCCTTTCCTATGCACTGTCTGGCAATGGGTT
CAGGGTCCAGGGTCCTTGGTTACTTAAGCCACTTGTCTCCTTAAACCTGG
GCCACCCTTGGTTAAAATCAACACTGACTTGGGGCCTTGTTTCTCTCAAC
CTCCCTTTTTCAAAAGAAAACTTTGTGCTTGGGGAGATGGCTTGCAAAAT
CAAAAATTTTGCTGTATGAATATGAGGAACTGAGTCCCAAATCTCCAAAA
GGCCTCCCCTCACAATTGGGTGTACTAACGGGTCTCTTTAATCTCCATTC
TCTTTTTTTATAAGGTTACGGTAAACAAACAAACCCTCAAATTTTTGTCG
GCTATTAAAAATAACAATATCCGTTCATTTATAACCACATGTCGCTCCCT
CCTACTCTTTTATTGTTTAATAACCCCACCATCAAATTCCTTTCGCTTTA
CTCCCTTACTTTTGAATATTATACCCCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_m24.b1 MSMg01no412_m24.b1 CHROMAT_FILE:
MSMg01no412_m24.b1 PHD_FILE: MSMg01no412_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:18 2005
         (214 letters)



>mm_chr15_78523644_78524257
          Length = 614

 Score =  371 bits (192), Expect = e-107
 Identities = 204/208 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgggtaggtcaccaggtatgaatagatgctagggttagaggcagagatgcttac 64
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaattctgggtaggccaggaggtatgaatagatgctagggttagaggcagagatgcttac 353

                                                                       
Query: 65  cagaggggagcatgaggaaggcccggaggagaaccgtagattcagtgtcttctagcagta 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 352 cagaggggagcatgaggaaggcccggaggagaaccgcagattcagtgtcttctagcagta 293

                                                                       
Query: 125 ggggacacgtcaggcgtgcaagagctgtgatgtgggtgtggagtttcaagaccaaacatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ggggacacgtcaggcgtgcaagagctgtgatgtgggtgtggagtttcaagaccaaacatg 233

                                       
Query: 185 caaggggagaacagagggattgggggtg 212
           ||||||||||||||||||||||||||||
Sbjct: 232 caaggggagaacagagggattgggggtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no412_m24.g1 MSMg01no412_m24.g1 CHROMAT_FILE:
MSMg01no412_m24.g1 PHD_FILE: MSMg01no412_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:18 2005
         (381 letters)



>mm_chr15_78296344_78297124
          Length = 781

 Score =  729 bits (377), Expect = 0.0
 Identities = 380/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctagcctcctagatgggctttctgcctcctgtcccctcctctatcccatcctccacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctagcctcctagatgggctttctgcctcctgtcccctcctctatcccatcctccacat 260

                                                                       
Query: 61  tgtcaccccaaagatctcctgactcctgccctcatccactgggtctgaatccttccatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaccccaaagatctcctgactcctgccctcatccactgggtctgaatccttccatgg 320

                                                                       
Query: 121 ctcccaacaaccacaccatgacgcccaagcctgcttaccgtctcttgtcacacacaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcccaacaaccacaccatgacgcccaagcctgcttaccgtctcttgtcacacacaacag 380

                                                                       
Query: 181 cctttattgaagcctgtgagaccttagcctagtgccaccacactgaggctgggtagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttattgaagcctgtgagaccttagcctagtgccaccacactgaggctgggtagcatg 440

                                                                       
Query: 241 tgggagcctttcctatgcactgtctggcaatgggttcagggtccagggtccttggttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggagcctttcctatgcactgtctggcaatgggttcagggtccagggtccttggttact 500

                                                                       
Query: 301 taagccacttgtctccttaaacctgggccacccttggttaaaatcaacactgacttgggg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 taagccacttgtctccttaaacctgggccacccttggttaaaatcaacactggcttgggg 560

                                
Query: 361 ccttgtttctctcaacctccc 381
           |||||||||||||||||||||
Sbjct: 561 ccttgtttctctcaacctccc 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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