BAC Information

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BAC

Clone NameMSMg01-413M16
Chromosome15 (Build37)
Map Location 51,051,163 - 51,051,553
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413M16.T7 (MSMg01no413_m16.b1)MSMg01-413M16.TJ (MSMg01no413_m16.g1)
ACCAG510241AG510242
length741752
length of high quality
(start - end)
496 (31 - 526)488 (64 - 551)
definitionCHROMAT_FILE: MSMg01no413_m16.b1 PHD_FILE: MSMg01no413_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:35 2005CHROMAT_FILE: MSMg01no413_m16.g1 PHD_FILE: MSMg01no413_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCTTTGTTT
TGCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTCCAC
CTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTG
ACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTT
GTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATT
TTTCCCTTGTGTCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATA
AGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATTT
GACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATG
ATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTTC
CACTGGATGGTTTTAGCTCCCTTGTCGAACATCAAGTGACCATAGGTGTG
TGGGTTTATTTCTGGCCCTTTTATTCTATTCCACTGGTCTACTTGTCTGC
CCCCATTCCCTCTTCATGCCGTTTTTTACCCCTTCTGTTCTCGTTTTTTC
TCTTTAGGCCCCGTATGGCCGTTTCTCTTTAATGTTCCTCTCTCCTTTGA
CACCAACTCTTTTTTTCCTTATTTTTTCCGTTTTTCCCTCG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTATCATGTCCTTCTGTCAGTCAGTCTTGGGCCCCAC
ATTTGGCCTTTGGTGTGTTAGTAGGAACAAAATGCCTATTCTTCTACCTA
AATCCAGGAAGAGATTTTGTGTCTGATCTTATTCCTTTTTGTATTTATCA
CTTTTCTGTTTGGAAGTATTAATTTTTTTGTCTTTTGAGCCATTTCTGTC
ATAGTATTTTTATTTTTTAAAAATTAAATAAATAAAAGAGTCATTGAGAT
GGCTCAGTGAATAAAGCCATCTGTTACTAAGCTTGATGACTTGAGTTCAT
CCCTGAAGTCATATGATGGAATGAGGGAAGTACAAGTTGTCCTATATCCT
CCTTGCATGTGCCTTGGTAGGTATATGCATCCCCTTTCCCTGTGGAAGGC
TTTCTCAGCCTTTTTATTTGCCTGTAGTTCTCTGTGTATAACTAACTCTA
CCTTCTGTCCCAATTAGCACGCATATTGGTGTCATCCTTGTTCAACTCAT
GTTTGGGAAACCATATTNAGGAGATTTCCCAAATGTAACTTCTGACATTT
CTATTATACACAATCTTATATCAAATTCCTTGTTCCTCTGGCTCTTAACT
TTTTCAAACCCTACCCCCCACCTTCTTTTTCAAAATTTCTTGAGTCTTGG
GCCCAGAAAATTTTCCCAAAAATACCATTTCGCCTGGTCTTTTCCACTTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_m16.g1 MSMg01no413_m16.g1 CHROMAT_FILE:
MSMg01no413_m16.g1 PHD_FILE: MSMg01no413_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:35 2005
         (488 letters)



>mm_chr15_51051163_51052050
          Length = 888

 Score =  745 bits (385), Expect = 0.0
 Identities = 391/395 (98%), Gaps = 4/395 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatcatgtccttctgtcagtcagtcttgggccccacatttggcctttggtgtgttagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctatcatgtccttctgtcagtcagtcttgggccccacatttggcctttggtgtgttagta 332

                                                                       
Query: 61  ggaacaaaatgcctattcttctacctaaatccaggaagagattttgtgtctgatcttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggaacaaaatgcctattcttctacctaaatccaggaagagattttgtgtctgatcttatt 272

                                                                       
Query: 121 cctttttgtatttatcacttttctgtttggaagtattaatttttttgtcttttgagccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cctttttgtatttatcacttttctgtttggaagtattaatttttttgtcttttgagccat 212

                                                                       
Query: 181 ttctgtcatagtatttttattttttaaaaattaaataaataaaagagtcattgagatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ttctgtcatagtatttttattttttaaaaattaaataaataaaagagtcattgagatggc 152

                                                                       
Query: 241 tcagtgaataaagccatctgttactaagcttgatgacttgagttcatccctgaagtcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tcagtgaataaagccatctgttactaagcttgatgacttgagttcatccctgaagtcata 92

                                                                       
Query: 301 tgatggaatgagggaagtacaagttgtcctatatcctccttgcatgtgccttggtaggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 91  tgatggaatgagggaagtacaagttgtcctatatcctccttgcatgtgcctt----ggta 36

                                              
Query: 361 tatgcatcccctttccctgtggaaggctttctcag 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  tatgcatcccctttccctgtggaaggctttctcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)