BAC Information

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BAC

Clone NameMSMg01-413M17
Chromosome15 (Build37)
Map Location 63,055,384 - 63,225,254
singlet/doubletdoublet
Overlap genenone
Upstream genePvt1, LOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413M17.T7 (MSMg01no413_m17.b1)MSMg01-413M17.TJ (MSMg01no413_m17.g1)
ACCAG510243AG510244
length745772
length of high quality
(start - end)		514 (58 - 571)466 (61 - 526)
definitionCHROMAT_FILE: MSMg01no413_m17.b1 PHD_FILE: MSMg01no413_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:35 2005CHROMAT_FILE: MSMg01no413_m17.g1 PHD_FILE: MSMg01no413_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,225,003 - 63,225,254)(63,055,384 - 63,055,849)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCTGAATT
TACAAAACAATTTCCCAGTTACAGATATAAACAGACAATGTTCTGTGATT
CATATATCTTATAGCAACTCTGTAGTATACTTTTGACACCAGAGGTGATG
CCTATCAAAATTACAATGTTATTAGCTGGGTGATGGTGGCACAAGCCTTT
AATCCCAGCACAGAGAAGGCAGAGACAGGCAGATCTCTGAGTTCAAGGCC
AGCCTGGTTTATAGAGTAAGTTCCAGGACAGCTGGGGCTACACAGAGAAA
TCCTGTCTTATTTTGATACAAAAAGAAAAAAGACAATGCCTTCTTTTTTA
CATATGTGGACATAGAAAAGCATTATGAGATTGAGGCAATCTTGGGCTAC
ATTGTGCTGTCTCATTTTAAACAAGACAAACAGAACAGCAGCAATTACCA
ACTTTCTATGGAGTCAAAGGATGAACAGACCAACCTTTAGCTAAATGAAC
AGCACTAGAGGCCTCACTCTACCTGACTTTAAAATTTGTTACAAAACTTC
ACAAACCAAAACAGTGTGGTGCTACATAACAATAGATAACATGATAATCA
AAAACACAACAATACAAAATTATCAACAACTCAGGACTGATTATCCAATT
TAAACCTTATATACCATCTGCCAGTTATTTTGTGACTGTTTCTATAATCC
TACAATGGATAAAGAACTATCACATCACCAAGTTTATGCCCACCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAACCTCTGGGAAGAAGAGAAGAACTAACTTCCTTTTTATA
TTGTTTCTCTCCAACGTTTGTTATAGCACAGACACGCGGGCAACCTGTGC
AACACAATCTTTTTAAACCAGGTGGCTCGTTAGACGGCTGAACATTCTTT
ATTGAAAGGTTATTGTGTCCGTCAGTTTGGAATGCTTTTCTGACCATACA
TTATTTTCCCACACAGAAATCAGCTGCTTATTGACTCCTGGTTGCATGTA
ATTGAGCAGCTGTCTTTCTGAACAAAGTTTTTTATGATCCTGGAGCACAC
CCAAATATGCAGTAGGCTTAGCTTATTTCCACTCTCTTTGAGTTGAGTTT
TCCCATCCGTTCTCATTTCTCCAACCCATTCACTAAAAAATTAATTGATA
GGCTCCTATGATCATCTTGTAAACATAGATTATTAAACACATATTTTAAT
TCAAAAAGTATGTCCATAACTTATGTTGTAAAATAATTGCATTTCTCCTT
GCTAAAGGTTGATATCATTTACTTTCTAATAATGACACTTTTGTTTCTTT
CCAGTCCTTAACATTATTTCTCCTTATCAATGGTGGTATAAAGTTTACTT
CCACCAATTTTCCAGAGACATACTAAATATTGTGGATTTTTTGGCCGGGG
CGTTTGCTTTTCTTTTTAAACGGGGGAAACAAAAAAAAAATTACCCTTTT
TTCCGGTTGGTTTGGAAGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_m17.b1 MSMg01no413_m17.b1 CHROMAT_FILE:
MSMg01no413_m17.b1 PHD_FILE: MSMg01no413_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:35 2005
         (514 letters)



>mm_chr15_63224939_63225852
          Length = 914

 Score =  456 bits (236), Expect = e-132
 Identities = 248/252 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   aatttcccagttacagatataaacagacaatgttctgtgattcatatatcttatagcaac 61
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 316 aatttcccagtcacagatataaacagacaatgttctgtgattcatatatcttataggaac 257

                                                                       
Query: 62  tctgtagtatacttttgacaccagaggtgatgcctatcaaaattacaatgttattagctg 121
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tctatagtatacttttgacaccagaggtgatgcctatcaaaattacaatgttattagctg 197

                                                                       
Query: 122 ggtgatggtggcacaagcctttaatcccagcacagagaaggcagagacaggcagatctct 181
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 196 ggtgatggtggcacaagcctttaatcccagcacagagaaggcagagccaggcagatctct 137

                                                                       
Query: 182 gagttcaaggccagcctggtttatagagtaagttccaggacagctggggctacacagaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gagttcaaggccagcctggtttatagagtaagttccaggacagctggggctacacagaga 77

                       
Query: 242 aatcctgtctta 253
           ||||||||||||
Sbjct: 76  aatcctgtctta 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_m17.g1 MSMg01no413_m17.g1 CHROMAT_FILE:
MSMg01no413_m17.g1 PHD_FILE: MSMg01no413_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:35 2005
         (466 letters)



>mm_chr15_63055184_63056049
          Length = 866

 Score =  870 bits (450), Expect = 0.0
 Identities = 462/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctctgggaagaagagaagaactaacttcctttttatattgtttctctccaacgtttg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctctgggaagaagaggagaactaacttcctttttatattgtttctctccaacgtttg 260

                                                                       
Query: 61  ttatagcacagacacgcgggcaacctgtgcaacacaatctttttaaaccaggtggctcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatagcacagacacgcgggcaacctgtgcaacacaatctttttaaaccaggtggctcgt 320

                                                                       
Query: 121 tagacggctgaacattctttattgaaaggttattgtgtccgtcagtttggaatgcttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagacggctgaacattctttattgaaaggttattgtgtccgtcagtttggaatgcttttc 380

                                                                       
Query: 181 tgaccatacattattttcccacacagaaatcagctgcttattgactcctggttgcatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 381 tgaccatacattattttcccacacagaaatcagctgcttattgactcctggttgtgtgta 440

                                                                       
Query: 241 attgagcagctgtctttctgaacaaagttttttatgatcctggagcacacccaaatatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgagcagctgtctttctgaacaaagttttttatgatcctggagcacacccaaatatgc 500

                                                                       
Query: 301 agtaggcttagcttatttccactctctttgagttgagttttcccatccgttctcatttct 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 agtaggcttagcttatttccactctctttgagttgagttttcccatccgttcccatttct 560

                                                                       
Query: 361 ccaacccattcactaaaaaattaattgataggctcctatgatcatcttgtaaacatagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaacccattcactaaaaaattaattgataggctcctatgatcatcttgtaaacatagat 620

                                                         
Query: 421 tattaaacacatattttaattcaaaaagtatgtccataacttatgt 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattaaacacatattttaattcaaaaagtatgtccataacttatgt 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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