BAC Information

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BAC

Clone NameMSMg01-414G04
Chromosome15 (Build37)
Map Location 20,218,989 - 20,219,237
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414G04.T7 (MSMg01no414_g04.b1)MSMg01-414G04.TJ (MSMg01no414_g04.g1)
ACCAG510694AG510695
length767785
length of high quality
(start - end)
277 (44 - 320)250 (73 - 322)
definitionCHROMAT_FILE: MSMg01no414_g04.b1 PHD_FILE: MSMg01no414_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:24 2005CHROMAT_FILE: MSMg01no414_g04.g1 PHD_FILE: MSMg01no414_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGGTGGTATCTTTAGGATCACTTATATATAATATTATCATCTGCA
AAAAGTGATATTTTGACTTCTTCCTTTCCAATTTGTATCCCCTTGATCTC
CTTTTTTTTGTCTAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAAT
AGGTAGGGAGAGAGTGGACAGCCTGTCTTGTCCCTGATTTTAGTGTGATT
GCTACCAGCTTCTCACCATTTACTTTGATGTTGGTTACTGGTTTGCTGTA
GATTGCTTTTATCATGTTTAGTTATTTTCCTTGAATTCCTGATCTTTCCA
AGACTTTTATCATGAATGGCTGTTGGATTTTGTCAAATGCTTTCTCCACA
TCTAACTAGATGATCATGTGGTGTTTGTCTTTGTGTTTGTTTATATACTG
GATTATGTTGATTGATTTCGATATATTGAACCATCCCTGCATCCCTGGGA
TGAAACCCACTTGGTCAGGAAGGATGATTGTTTTGATGTAGTCTTGGATA
CGGATTTATATCATTTTATCGATGTTTTTTTCTTTGAATTCATAATCTAA
AATGATTCTGACGTTTTCCATTTTCGCTGTATTTTCTTGCTGCTTATCTT
TCCACTCAAATTGTTCTTCCATTTTGGCGGGGTTTATAACACCCTCATTT
CTCTTCTTTTCTAATTTTTCTTTTTATATCTCCTTACTTTTTATTTATAA
TTATTTATACATTTATC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAATCCAATGCTGGAATTTCCAAGGCTAGATTT
TCCAAGGAGCGCAAAGGGTAATGAGCAAGAGAATTAATAATGTATTGTGC
TTCCCCACATTCTATTGCACACTTATAGTATGCTACAAGTATAGGTTCAA
AACTGCGATAGAAAAGAGACAAAATGAGTTCTAGGCAACATGGGTTACTT
TGTGTATCAGGATACCTTGCCAACAAGATAGTATTTTACAAGCTAATAGC
CCAGCCTCTGAGTTTGTTACATTGATATTCAGAATGCTTATGATTGGTTA
TGGAATTCATTTCTTTCACCTTCTCAAACTTTATAGGATTTGGGTTTTTT
ATTATTGTTTTTATACACGACGGCTTTATTTGCATAGATAGATAAGCATC
CTACCCATGACTTGATGCCCTCAGATATTCATGAGGAGCGTGTCTCATCC
TTTGGATCTGGCATTACCTATATTTTGTCACCCTCTTGTGTATTGTGCAC
GCTGATCTCTTGTTTCTCCCGAACAGCCCCCATGTCATTTTGTGAATATC
GTTTCACGTTGCCCTTCCATTATTCCTATATTCTTCTATACTTAATTCGT
TCTCTCACTATTTCTTTTTTTTTCTTTCCTTATCCGATTTCCAATAACTT
CTCCCCCACACTCCTATTCTTCTTTTCCTCCCCCGATCTACTCATTCCTA
ATTCCTTCGATCTCCCTCCTTTAATTACTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_g04.g1 MSMg01no414_g04.g1 CHROMAT_FILE:
MSMg01no414_g04.g1 PHD_FILE: MSMg01no414_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:25 2005
         (250 letters)



>mm_chr15_20218789_20219438
          Length = 650

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgctggaatttccaaggctagattttccaaggagcgcaaagggtaatgagcaagaga 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 caatgctggaatttccaaggctagattttccaaggagcgcaaaggggaatgagcaagaga 260

                                                                       
Query: 61  attaataatgtattgtgcttccccacattctattgcacacttatagtatgctacaagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaataatgtattgtgcttccccacattctattgcacacttatagtatgctacaagtat 320

                                                                       
Query: 121 aggttcaaaactgcgatagaaaagagacaaaatgagttctaggcaacatgggttactttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggttcaaaactgcgatagaaaagagacaaaatgagttctaggcaacatgggttactttg 380

                                                                       
Query: 181 tgtatcaggataccttgccaacaagatagtattttacaagctaatagcccagcctctgag 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaacaggataccttgccaacaagatagtattttacaagctaatagcccagcctctgag 440

                    
Query: 241 tttgttaca 249
           |||||||||
Sbjct: 441 tttgttaca 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)