BAC Information

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BAC

Clone NameMSMg01-414O19
Chromosome15 (Build37)
Map Location 77,741,704 - 77,930,923
singlet/doubletdoublet
Overlap geneTxn2, Foxred2, Eif3s7, Cacng2
Upstream geneZfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9
Downstream geneRabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414O19.T7 (MSMg01no414_o19.b1)MSMg01-414O19.TJ (MSMg01no414_o19.g1)
ACCAG511104AG511105
length768763
length of high quality
(start - end)		491 (47 - 537)508 (75 - 582)
definitionCHROMAT_FILE: MSMg01no414_o19.b1 PHD_FILE: MSMg01no414_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:08 2005CHROMAT_FILE: MSMg01no414_o19.g1 PHD_FILE: MSMg01no414_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,930,509 - 77,930,923)(77,741,704 - 77,742,211)
sequence
NNGGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATC
CGCGGAATTCTATAAAATCTTCCTACATCTAAGCAGCATTATTATATGAA
AGTACATCTTCATATTGATCTGCAGGAAATTTTCCCAATAGTGTGGGCTG
ATTCATTAGGCTCTGTAATAGTGGCATAAAAATCATATCAGCTTCGAGAA
GCAATCCTGGGATGAAGTCGTTGGGGTCCATGCCTCTCAGAGAGTGCCAT
CGCAGCCATGCAAAACGTGGGCCATCTCAGGAAAACTCGCTTGCCATAAT
GTTTTCTACATGGCTTGTGCTATCAGTTGACAGAGGAGAACCCTTCACAT
TCCCAGAGAGCCATCTTCCAGGCAGCTGTATATTCTCACGTTGACATTTC
TAGCATGGTAGCAGTGCAGAAGCTTGCTGGGTCTAAGAGAACACAGGTCC
CCCCTCCTATGATTCATCCTGGCTGGACCACTTGGATTCATGAGCATCCC
CTCCTGTGCCATCCAGAAAGAACATGCTGGACTTGGAGAGTTGATCTTCA
CCCCAAGAGTGCTTCTTTTGTAGAATAAGCACTGTCTTGTTAAACCCTAA
CCCGCTAACAGAACCATCTTGAATTTTTTTCCCCCCCCGAAAGGGTCCCC
CCTTAATAAAGGTTATACCAATTATGGGGATTAAATTCGGGCCCAAAATA
AAAAAAGAGACTCCTGGCGCTTTTATTTTGGAAAACCCCCACCGCAAATT
AATTGGTTTCCCACCAAA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACTAAGCATTCTCCAGGGGTGAGGT
CACCTCTGGCTCTCCGGGGCTGCTGGAGTTCAGGGCAGAGGAGGCTGTGT
CAGAGATCAGGGAGGACGCAAAGTCCAATGGAAGACCAGTAGCCTGGGCT
AGGCATGGAGCAGGGAGAGCCAGGGAGAGCCAGGGAGAGGAAGGTTTACC
TAACTTCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCCTTCTTTTCTCTCT
TTCCACCTACCATCTACCTACCTTTCTATCAATCTATCATCTATCTTTTT
TTTCTCTATTTTATTCTATTTTTCTTAATACCTAACACTTCTTAAGCTCT
TGCTGAGTGACTGAGTATTTAAATCTGCCATGTCCCCTAATCCTACCCAG
ATCCTTAATCAGCACTGTTATGAACCCCAATTTACAGGGGTGGATTTGGG
TCACAGCATGGTGAGAGCCTTGCTCCACAGGGAAAGCAATCTGTCTGGTG
AGTATCTGTAAAATGGCAATACCATCCATGCACATCATGGTGTAGGAGGA
TATTGTGAGGACTGGGTAAGATGGCACTGGGCACCTCACTCAGAGGGGGC
AGGGCCATGGCAGCACCCCCATTTTCTGGAGGGAGACTCATCATCTCCAC
GTCTGGGTGTGAACTTAACGTGTTGTGGCCGTATATGGCCCTATGGACTG
TTTTTTCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_o19.b1 MSMg01no414_o19.b1 CHROMAT_FILE:
MSMg01no414_o19.b1 PHD_FILE: MSMg01no414_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:08 2005
         (491 letters)



>mm_chr15_77930033_77930923
          Length = 891

 Score =  787 bits (407), Expect = 0.0
 Identities = 413/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 77  caggaaattttcccaatagtgtgggctgattcattaggctctgtaatagtggcataaaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 caggaaattttcccaatagtgtgggctgattcattaggctctgtaatagtggcataaaaa 832

                                                                       
Query: 137 tcatatcagcttcgagaagcaatcctgggatgaagtcgttggggtccatgcctctcagag 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tcatatcagcttcgagaagcaatcctgggatgaagtcgttggggtccatgcctctcagag 772

                                                                       
Query: 197 agtgccatcgcagccatgcaaaacgtgggccatctcaggaaaactcgcttgccataatgt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 agtgccatcgcagccatgcaaaacgtgggccatctcaggaaaactcgcttgccataatgt 712

                                                                       
Query: 257 tttctacatggcttgtgctatcagttgacagaggagaacccttcacattcccagagagcc 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 711 tttctacatggcttgtgctatcagttgacagaggagaacccttcacattcccagagatcc 652

                                                                       
Query: 317 atcttccaggcagctgtatattctcacgttgacatttctagcatggtagcagtgcagaag 376
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atcttccaggcagctgtagattctcacgttgacatttctagcatggtagcagtgcagaag 592

                                                                       
Query: 377 cttgctgggtctaagagaacacaggtcccccctcctatgattcatcctggctggaccact 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cttgctgggtctaagagaacacaggtcccccctcctatgattcatcctggctggaccact 532

                                                                  
Query: 437 tggattcatgagcatcccctcctgtgccatccagaaagaacatgctggacttgga 491
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tggattcatgagcatcccctcctgtgccatccagaaagaacatgctggacttgga 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_o19.g1 MSMg01no414_o19.g1 CHROMAT_FILE:
MSMg01no414_o19.g1 PHD_FILE: MSMg01no414_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:08 2005
         (508 letters)



>mm_chr15_77741504_77742411
          Length = 908

 Score =  951 bits (492), Expect = 0.0
 Identities = 504/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactaagcattctccaggggtgaggtcacctctggctctccggggctgctggagttcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactaagcattctccaggggtgaggtcacctctggctctccggggctgctggagttcagg 260

                                                                       
Query: 61  gcagaggaggctgtgtcagagatcagggaggacgcaaagtccaatggaagaccagtagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaggaggctgtgtcagagatcagggaggacgcaaagtccaatggaagaccagtagcc 320

                                                                       
Query: 121 tgggctaggcatggagcagggagagccagggagagccagggagaggaaggtttacctaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggctaggcatggagcagggagagccagggagagccagggagaggaaggtttacctaac 380

                                                                       
Query: 181 ttctcctccttctcctcctcctcctccttctccttcttttctctctttccacctaccatc 240
           |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct: 381 ttctcctccttctcctcctcctcctccttctccttcttctctttctctccacctaccatc 440

                                                                       
Query: 241 tacctacctttctatcaatctatcatctatcttttttttctctattttattctatttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacctacctttctatcaatctatcatctatcttttttttctctattttattctatttttc 500

                                                                       
Query: 301 ttaatacctaacacttcttaagctcttgctgagtgactgagtatttaaatctgccatgtc 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ttaatacctaacacttcttaagctcttgctgagtgaccgagtatttaaatctgccatgtc 560

                                                                       
Query: 361 ccctaatcctacccagatccttaatcagcactgttatgaaccccaatttacaggggtgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctaatcctacccagatccttaatcagcactgttatgaaccccaatttacaggggtgga 620

                                                                       
Query: 421 tttgggtcacagcatggtgagagccttgctccacagggaaagcaatctgtctggtgagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgggtcacagcatggtgagagccttgctccacagggaaagcaatctgtctggtgagta 680

                                       
Query: 481 tctgtaaaatggcaataccatccatgca 508
           ||||||||||||||||||||||||||||
Sbjct: 681 tctgtaaaatggcaataccatccatgca 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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