Query= MSMg01no415_c19.b1 MSMg01no415_c19.b1 CHROMAT_FILE:
MSMg01no415_c19.b1 PHD_FILE: MSMg01no415_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:28 2005
(593 letters)
>mm_chr15_17923943_17924934
Length = 992
Score = 1085 bits (561), Expect = 0.0
Identities = 583/593 (98%), Gaps = 7/593 (1%)
Strand = Plus / Plus
Query: 1 cacaaggattcaacgtgcaaaatcaaaatactttcactttcaccatatttctatatcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaaggattcaacgtgcaaaatcaaaatactttcactttcaccatatttctatatcttt 260
Query: 61 gagaacatatattaactaccaaaaactagtaaaatttatttcattgatgtttctatattc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gagaacatatattaactaccaaaaactagtaaaagttatttcattgatgtttctatattc 320
Query: 121 cgtgaataatcctcccagtgtttgttacttagcagaaaacgaattttccccataataatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtgaataatcctcccagtgtttgttacttagcagaaaacgaattttccccataataatt 380
Query: 181 aaattttttttcactttcagaaatattgcaaaatgttatcaatttggttgtatctgcttt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaa-tttttttcactttcagaaatattgcaaaatgttatcaatttggttgtatctgcttt 439
Query: 241 gttttttttttgttttgtttgtttgtttgtttttgttttgttttgttttgttttgttttc 300
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 440 g-tttttttttgttttgtttgtttgtttgt-----ttttgttttgttttgttttgttttc 493
Query: 301 caggtatgtaatcggtctttggccacgtgtgttggaaaaacccactgctaagcctacctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 494 caggtatgtaatcggtctttggccacgtgtgttggaaaaacccactgctaagcttacctt 553
Query: 361 cagtaacttacacaaaacaggcatgacatcaccagatgctaagttgtggcacatttccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cagtaacttacacaaaacaggcatgacatcaccagatgctaagttgtggcacatttccac 613
Query: 421 tgttgctaggcttagcatatcatccctatgttctccccatcccccaccccgctcctggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgttgctaggcttagcatatcatccctatgttctccccatcccccaccccgctcctggtg 673
Query: 481 cctttttttaaacctttaaatcagtttattttttacatccatattccatttcccaaccca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cctttttttaaacctttaaatcagtttattttttacatccatattccatttcccaaccca 733
Query: 541 ttccccatccactctcagactgctccacatcccatacctccttccctccccac 593
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttccccatccactctcggactgctccacatcccatacctccttccctccccac 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 992
Length adjustment: 10
Effective length of query: 583
Effective length of database: 982
Effective search space: 572506
Effective search space used: 572506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_c19.g1 MSMg01no415_c19.g1 CHROMAT_FILE:
MSMg01no415_c19.g1 PHD_FILE: MSMg01no415_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:28 2005
(563 letters)
>mm_chr15_18095073_18096039
Length = 967
Score = 920 bits (476), Expect = 0.0
Identities = 541/564 (95%), Gaps = 8/564 (1%)
Strand = Plus / Minus
Query: 1 atttgttcagcataaggcttgggtacactcactcatttagtctatagctagtatcacacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atttgttcagcataaggcttgggtacactcactcatttagtctatagctagtatcacacc 703
Query: 61 tgcagtgaataaatgtgtgttcatatctcccagggaaagtcacaaagcaatatgga-tcc 119
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct: 702 tgcagtgaataaatgtgtgttcatatcttccagggaaagtcacaaagcaatatggagt-c 644
Query: 120 aagcctatgatttaaatggacagccagaaatttggaagg---aagatttaacatttgatg 176
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 643 aagcctatgatttaaatggacagccagaaatttggaaggaacaagacttaacatttgatg 584
Query: 177 gggaagacttttagagacgaggtagacaaagatgaacaaaatacaaatttgccctctcca 236
|||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 583 gggaagacttgtagagacgaggtagacaaagatgaacaaaatagaaatttgccatctcca 524
Query: 237 atgcaaggcaccttcactaataaatatctttgctgaaaaataaatgcagaatggaagaca 296
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atgcaaggcaccatcactaataaatatctttgctgaaaaataaatgcagaatggaagaca 464
Query: 297 ggaaaagaaaattgtaagtatttttgatgatcccttactcagctacaaaatgaaga-ttc 355
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 463 ggaaaagaaaattgtaagtatttttgatgaacccttactcagctacaaaatgaagactt- 405
Query: 356 taaatgttttgaatctcttctcctatttatgttgaggatatgcatttgttttcaggttta 415
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 404 taaatgttatgaatctcttctcttatttatgttgaggatatgcatttgttttcaggttta 345
Query: 416 tctttcttacagatatttccttttctcttaggtccttataatgtaatacaaaaatgctaa 475
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 344 tctttcttacagatatttccttttgtcttaggtccttataatgtaatacaaaaatgctaa 285
Query: 476 attttcccataatttaggtattgtcaatattacagcattgtaagtattaaagggaaaa-t 534
||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 284 atttttacataattttggtattgtcaatattacagcattgtaagtacgaaagggaaaaat 225
Query: 535 caatgttactaaagaaatttcttt 558
||||||||||||||||||||||||
Sbjct: 224 caatgttactaaagaaatttcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 967
Length adjustment: 10
Effective length of query: 553
Effective length of database: 957
Effective search space: 529221
Effective search space used: 529221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
