BAC Information

Click to search

BAC

Clone NameMSMg01-415M16
Chromosome15 (Build37)
Map Location 7,350,362 - 7,350,605
singlet/doubletsinglet
Overlap genenone
Upstream geneDab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr, Lifr, Egflam
Downstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415M16.T7 (MSMg01no415_m16.b1)MSMg01-415M16.TJ (MSMg01no415_m16.g1)
ACCAG511766AG511767
length764699
length of high quality
(start - end)
244 (61 - 304)---
definitionCHROMAT_FILE: MSMg01no415_m16.b1 PHD_FILE: MSMg01no415_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:16 2005CHROMAT_FILE: MSMg01no415_m16.g1 PHD_FILE: MSMg01no415_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAT
GTTGCCGTTCATTAGCTAATATAAAATTAAAAATAGAGCTAGACCCGGTG
GCACAAACTGTCATTATTCCAGCTCTTGGGAAGGCTAAAGAAGGAAGATT
TTAATTTCCACAGCATAGTGGCCTAGGCAGTGACTTCCAGTAGTGAAGCT
CTGCCTAGAAAAGTAAAACAAAATAAATTGCAAACCACTACCACCCTCCC
ATGAAAATTTTGTTATGGCTGCCATCCATTCATTTGGGGAATACATGTCC
AAGCATATTTCTGAGGTGAAACTCCTCAGTCTCCAGTTGGAGTTGCTCTC
CAACGTATCCCTTGGAGCTCTGGAACTCTCCTCTCTGGAAGTAGAAGGTC
TGAATTTCTTGTTAGTTCTGCACTTTGTGGGGGAGGGGGGGAGTTTTTTA
CCTCGTTTTCCTTCTCCTCTTCTCCTCTTCATACTCTCCCCCCTCTTTTT
TATTCCCTATCTTCCCCTTTTTTTTTCTTCTCCCTTTCTTCCTTTCCCCC
CTTTTTTCTCTCCCCCTCTTTTTTCTTCCCCCCCCCCTTTCTACCCTTAT
TTTTATTTTTTCTCTCCTCTGCCTTTTCCTCCCCCATCCTCCGTTTTCCC
CCTTTTCCCCCTTCTCCATTCCCCCTTTTCTTTATCCCTCCTTCTTTCTT
TTCCTCCCCCATTTCTTCTTATCTTTCTGTACCCTTTTTCCCCCCTTTTC
TTCCTCCTTCACCC
TGTTAGGCTGGCGGCCGCCTGTTCGACAATTTAGTGACCTATAGATTTTC
AGCGAAATCAGCCAGGAACTGTATGTAAACTGAAAAAAAACTAATGAAAT
CCCTGGAGGATGCTGCTTGTGCACTGATCCTCGTGGCTTAATCCGCCTGC
TTCCTAAGCACCCCACACACCAGTCCAGAATGAACTGGCAACGTCAAGAG
GACTTTCCTATACAAATCTTCATATACATATAATGTGCGGGATATATATA
TTTACCCACCTAATACCACGTATATTTTTTATATGTAACCGCTTGACGTC
TGAGGCCTATCTTTCACCCCCTTACATATTTTACCCTTCCTATCCCTTCT
CTTCCTTTTCCACCCCCCCCCTCTTCTCCTTCCCTCTCCTTGTTCCTACT
CTTCCTCCCTTCCTTTCCCCTTTCCTCCCTCCCCCCCCCCTTCTTTCCCC
CTTTCCACCTCCCTTTCCTTTCTTCCTCCTCCTTATTTTCTCCTCCCCAT
ACCCCCCCTTTCCCTCCCATTCCTTACTTCCCTTCCTTTCCCCCTTCTCT
TCTTCTCTCCCTCCTCTTTTCTTTCTTCCCCCCTCTCCCTTCTTCCTCCT
TCCTTCCCCTTTCCTTATCCCCCCCTTTTTCTCCCTCTCTTTCCTCTCCC
TCTTTCTCTTTTCTTCCCTTTTTCTCCTCCTTCCCAATTTCTTTCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_m16.b1 MSMg01no415_m16.b1 CHROMAT_FILE:
MSMg01no415_m16.b1 PHD_FILE: MSMg01no415_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:16 2005
         (244 letters)



>mm_chr15_7350162_7350805
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagctaatataaaattaaaaatagagctagacccggtggcacaaactgtcattattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attagctaatataaaattaaaaatagagctagacccggtggcacaaactgtcattattcc 385

                                                                       
Query: 61  agctcttgggaaggctaaagaaggaagattttaatttccacagcatagtggcctaggcag 120
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 384 agctcttgggaaggctaaagaaggaagattttaatttccagagcacagtggcctaggcag 325

                                                                       
Query: 121 tgacttccagtagtgaagctctgcctagaaaagtaaaacaaaataaattgcaaaccacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgacttccagtagtgaagctctgcctagaaaagtaaaacaaaataaattgcaaaccacta 265

                                                                       
Query: 181 ccaccctcccatgaaaattttgttatggctgccatccattcatttggggaatacatgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaccctcccatgaaaattttgttatggctgccatccattcatttggggaatacatgtcc 205

               
Query: 241 aagc 244
           ||||
Sbjct: 204 aagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)