BAC Information

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BAC

Clone NameMSMg01-416K23
Chromosome15 (Build37)
Map Location 101,279,722 - 101,280,212
singlet/doubletsinglet
Overlap geneKrt85, 1700011A15Rik
Upstream geneLetmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt83
Downstream gene5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416K23.T7 (MSMg01no416_k23.b1)MSMg01-416K23.TJ (MSMg01no416_k23.g1)
ACCAG512443AG512444
length719738
length of high quality
(start - end)		491 (45 - 535)412 (57 - 468)
definitionCHROMAT_FILE: MSMg01no416_k23.b1 PHD_FILE: MSMg01no416_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:22 2005CHROMAT_FILE: MSMg01no416_k23.g1 PHD_FILE: MSMg01no416_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCCTATAGTCAGAGGATCCGCGGAATTCTGATCATATCCCCTCATT
AAGTTATGGACATTTAATCACAAATCTAGTGGTTGTTTTGCTTTGGTACA
AAAATCAAATGGGCAGAGTCGGGAAGCTTCTGTCCTGGGCTACATATAAC
CCGGTTCCCTAAGCTTGGGCTTTAAAAGTTGTTTTCAGCCAGATGTGGCA
GTTCATTGTCTCGGTACCCGTGCTTATGAAACCGAGGTTCTGAGACCTGG
AGTTCAAGGTCAGCCTTGGCTATATATTTCGACTCTGCATTTAAAAAGCC
ATTTTAGGGCTCCTGAGCTGCCTCAGCAGGTAAAAGCACTTGCTGCCGAG
TCTTTGATCCCCAGGACTCGTGTGGAGTGCCTTAGGGTTTCCACTGCTGA
GAAGAGACATCATGACCAAGACCATACTCATAAAGGACAACATTTCATTG
GGGCTGGCTTACAGTCTCAGAGGTTCAGTCCATTATCATCATGGCAGGAA
GCATGGCAGCAAACAGGCAGTCATGGCTCTGGAGGAGCTGACAGTTCTAT
ATCTTGTTCCCGAGTCAAACAGGAGAAGCCTGGCTCCTACATGGCTAGGA
AGAGGGTCTCAGAGTCCACCCTGACAGTGACAGTGACTTCCTCCACAAGT
CCATTCCTATTTCCAAAAGGGCACACCCCCTAAAAAGGCGACTTCCTGGG
ACAAGAAATTTCAAACCGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGTGGACTTTAAGAAGCAGGGTGAGTTCTTCATTGTTGATGGGT
TGATATTGCTTGTGGTTTGTTAAGTAATTGTGTGCAAAGAAGAAACAACA
ACAACAACAAGAATTTCAACATCCTGAGGGCAAAGATCAAACTTGCCCAA
GGAATTTGATACCCCCTAATCAGCAGGAAGTATTCTAATGATAACATCTC
TCCTTTCCTTTCTATCCTTTTTTTCTATCCTACATACCTAATGTTATAGG
GCTGAAAGGATAGGAAAAGAGGAGAAGAGTGGGGAAAAAAAGCAGAACTC
ACAAAGTAGCAACACTGGCTACAAGTGGCACCCAGATGTGGGGCTAAACA
CAATACAAAACCTGATTTCAATGCCATAGAGAAAATGGCTAAGGATGAAC
AAGTGACTTCTTTTTCAAGATGCCAGCNAAAAATAAAATAAAATAAAATA
AAATAAAATAAAATAAATGTATTGTGGCTGTTACCCCCAGAATATAGAGG
ATATTTTGGTTCATAAAAAAGTTTGGAAAAATGGCTGAACTGGTGGAAAA
AAATATATGGGGGGAAATGGAAGGTGCCTTATGGGGGGGGGCCCAAATGG
GAAAAAAAAGGAGGCCCCTGCCCCCCCCTCTATTAAAAGAATTCCAACTT
GCTGGGGCACGGGGAAAATTTAAGGGGAATGTATAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_k23.b1 MSMg01no416_k23.b1 CHROMAT_FILE:
MSMg01no416_k23.b1 PHD_FILE: MSMg01no416_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:22 2005
         (491 letters)



>mm_chr15_101279522_101280412
          Length = 891

 Score =  919 bits (475), Expect = 0.0
 Identities = 487/491 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcattaagttatggacatttaatcacaaatctagtggttgttttgctttggtacaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcattaagttatggacatttaatcacaaatctagtggttgttttgctttggtacaaaaa 260

                                                                       
Query: 61  tcaaatgggcagagtcgggaagcttctgtcctgggctacatataacccggttccctaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaatgggcagagtcgggaagcttctgtcctgggctacatataacccggttccctaagc 320

                                                                       
Query: 121 ttgggctttaaaagttgttttcagccagatgtggcagttcattgtctcggtacccgtgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttgggctttaaaagttgttttcagccagatgtggcagttcattgtctcagtacccgtgct 380

                                                                       
Query: 181 tatgaaaccgaggttctgagacctggagttcaaggtcagccttggctatatatttcgact 240
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaatcagaggttctgagacctggagttcaaggtcagccttggctatatatttcgact 440

                                                                       
Query: 241 ctgcatttaaaaagccattttagggctcctgagctgcctcagcaggtaaaagcacttgct 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctgcatttaaaaagccattttagggctcgtgagctgcctcagcaggtaaaagcacttgct 500

                                                                       
Query: 301 gccgagtctttgatccccaggactcgtgtggagtgccttagggtttccactgctgagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccgagtctttgatccccaggactcgtgtggagtgccttagggtttccactgctgagaag 560

                                                                       
Query: 361 agacatcatgaccaagaccatactcataaaggacaacatttcattggggctggcttacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacatcatgaccaagaccatactcataaaggacaacatttcattggggctggcttacag 620

                                                                       
Query: 421 tctcagaggttcagtccattatcatcatggcaggaagcatggcagcaaacaggcagtcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctcagaggttcagtccattatcatcatggcaggaagcatggcagcaaacaggcagtcat 680

                      
Query: 481 ggctctggagg 491
           |||||||||||
Sbjct: 681 ggctctggagg 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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