MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-416L10
Chromosome	15 (Build37)
Map Location	97,056,566 - 97,056,948
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4
Downstream gene	Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC667894 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Arid2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77044 MGI:1924294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sfrs2ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72193 MGI:1919443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc38a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105727 MGI:2145895
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc38a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67760 MGI:1915010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667941 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667941
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC546651 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546651
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Slc38a4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69354 MGI:1916604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amigo2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105827 MGI:2145995
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC038822 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239647 MGI:2446270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043354 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins pseudo : _no_value

name	LOC100042774 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042774
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	D15Ertd682e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71919 MGI:1277218
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pp11r (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19011 MGI:97746
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rapgef3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223864 MGI:2441741
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930570C03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67739 MGI:1914989
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hdac7a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56233 MGI:1891835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vdr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22337 MGI:103076
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem106c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380967 MGI:1196384
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col2a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12824 MGI:88452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Senp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223870 MGI:2445054
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pfkm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18642 MGI:97548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asb8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78541 MGI:1925791
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI836003 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239650 MGI:2146066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr288 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545140 MGI:3030122
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC634104 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:634104
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 2329 Proteins

name	Arid2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110624795 GeneID:77044 MGI:1924294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AT rich interactive domain 2 (Arid-rfx like) transcript_id : NM_175251.2

name	Sfrs2ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117647276 GeneID:72193 MGI:1919443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor, arginine/serine-rich 2, interacting protein transcript_id : NM_028148.2

name	Slc38a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381438 GeneID:105727 MGI:2145895
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 38, member 1 transcript_id : NM_134086.3

name	Slc38a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543734 GeneID:67760 MGI:1915010
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 38, member 2 transcript_id : NM_175121.3

name	Slc38a4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365242 GeneID:69354 MGI:1916604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 38, member 4 transcript_id : NM_027052.3

name	Amigo2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66392590 GeneID:105827 MGI:2145995
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adhesion molecule with Ig like domain 2 transcript_id : NM_178114.3

name	BC038822 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374053 GeneID:239647 MGI:2446270
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC038822 transcript_id : NM_172293.3

name	D15Ertd682e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374453 GeneID:71919 MGI:1277218
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 15, ERATO Doi 682, expressed transcript_id : NM_028003.2

name	Pp11r (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366558 GeneID:19011 MGI:97746
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : placental protein 11 related transcript_id : NM_008902.2

name	Rapgef3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450060 GeneID:223864 MGI:2441741
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rap guanine nucleotide exchange factor (GEF) 3 transcript_id : NM_144850.1

name	4930570C03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368946 GeneID:67739 MGI:1914989
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930570C03 gene transcript_id : NM_026353.3

name	Hdac7a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254547 GeneID:56233 MGI:1891835
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone deacetylase 7A transcript_id : NM_019572.2

name	Vdr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227202 GeneID:22337 MGI:103076
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vitamin D receptor transcript_id : NM_009504.3

name	Tmem106c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41235746 GeneID:380967 MGI:1196384
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 106C transcript_id : NM_201359.1

name	Col2a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70980519 GeneID:12824 MGI:88452
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type II, alpha 1 transcript_id : NM_031163.2

name	Senp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353113 GeneID:223870 MGI:2445054
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SUMO1/sentrin specific peptidase 1 transcript_id : NM_144851.3

name	Pfkm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367127 GeneID:18642 MGI:97548
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphofructokinase, muscle transcript_id : NM_021514.3

name	Asb8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801748 GeneID:78541 MGI:1925791
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 8 transcript_id : NM_030121.3

name	AI836003 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386196 GeneID:239650 MGI:2146066
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI836003 transcript_id : NM_177716.2

name	Olfr288 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111185919 GeneID:545140 MGI:3030122
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 288 transcript_id : NM_001011733.2

name	LOC634104 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149266752 GeneID:634104
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 2329 Proteins product : similar to Olfactory receptor 10AD1 transcript_id : XM_993741.2

name	Arid2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110624796 GeneID:77044 MGI:1924294
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence ISS]; GO:0016563 - transcriptional activator activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 note : zipzap product : AT rich interactive domain 2 (Arid-rfx like) protein_id : NP_780460.2

name	Sfrs2ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117647277 GeneID:72193 MGI:1919443
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : splicing factor, arginine/serine-rich 2, interacting protein protein_id : NP_082424.2

name	Slc38a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543733 CCDS:CCDS27777.1 GeneID:105727 MGI:2145895
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0015186 - L-glutamine transporter activity [Evidence IDA] GO_process : GO:0006868 - glutamine transport [Evidence IDA] codon_start : 1 product : solute carrier family 38, member 1 protein_id : NP_598847.2

name	Slc38a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543735 CCDS:CCDS27778.1 GeneID:67760 MGI:1915010
definition	codon_start : 1 product : solute carrier family 38, member 2 protein_id : NP_780330.2

name	Slc38a4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543737 CCDS:CCDS27779.1 GeneID:69354 MGI:1916604
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0015171 - amino acid transporter activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : system A amino acid transporter 3 product : solute carrier family 38, member 4 protein_id : NP_081328.2

name	Amigo2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017449 CCDS:CCDS27780.1 GeneID:105827 MGI:2145995
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] [Evidence ISS]; GO:0007157 - heterophilic cell adhesion [Evidence ISS]; GO:0007156 - homophilic cell adhesion [Evidence ISS]; GO:0043069 - negative regulation of programmed cell death [Evidence ISS] codon_start : 1 note : alivin 1; amphoterin induced gene and ORF 2 product : amphoterin induced gene 2 protein_id : NP_835215.1

name	BC038822 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26986609 CCDS:CCDS27781.1 GeneID:239647 MGI:2446270
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC239647 protein_id : NP_758497.1

name	D15Ertd682e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386276 CCDS:CCDS27782.1 GeneID:71919 MGI:1277218
definition	GO_function : GO:0008483 - transaminase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC71919 protein_id : NP_082279.1

name	Pp11r (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679429 CCDS:CCDS27783.1 GeneID:19011 MGI:97746
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0008083 - growth factor activity [Evidence ISS]; GO:0008236 - serine-type peptidase activity [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007565 - pregnancy [Evidence ISS]; GO:0006508 - proteolysis [Evidence ISS] codon_start : 1 product : placental protein 11 related protein_id : NP_032928.1

name	Rapgef3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450061 GeneID:223864 MGI:2441741
definition	GO_component : GO:0005952 - cAMP-dependent protein kinase complex [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0030552 - cAMP binding [Evidence IEA]; GO:0008603 - cAMP-dependent protein kinase regulator activity [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 note : exchange protein directly activated by cAMP product : Rap1 guanine-nucleotide-exchange factor directly activated by cAMP protein_id : NP_659099.1

name	4930570C03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385856 GeneID:67739 MGI:1914989
definition	codon_start : 1 product : hypothetical protein LOC67739 protein_id : NP_080629.1

name	Hdac7a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254548 GeneID:56233 MGI:1891835
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS] [Evidence IDA]; GO:0000118 - histone deacetylase complex [Evidence TAS]; GO:0005634 - nucleus [Evidence TAS] [Evidence IDA] GO_function : GO:0004407 - histone deacetylase activity [Evidence TAS] [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016566 - specific transcriptional repressor activity [Evidence TAS]; GO:0003714 - transcription corepressor activity [Evidence IDA]; GO:0008134 - transcription factor binding [Evidence TAS]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0030183 - B cell differentiation [Evidence TAS]; GO:0016568 - chromatin modification [Evidence TAS] [Evidence IEA]; GO:0006954 - inflammatory response [Evidence TAS]; GO:0045843 - negative regulation of striated muscle development [Evidence TAS]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IDA]; GO:0007399 - nervous system development [Evidence TAS]; GO:0000074 - regulation of progression through cell cycle [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : mFLJ00062 protein; histone deacetylase 7A, promoter 1; histone deacetylase 7A, promoter 2; histone deacetylase 7A, promoter 3 product : histone deacetylase 7A protein_id : NP_062518.2

name	Vdr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543944 CCDS:CCDS27784.1 GeneID:22337 MGI:103076
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS] [Evidence IDA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IMP]; GO:0006816 - calcium ion transport [Evidence IMP]; GO:0007275 - development [Evidence IMP]; GO:0050892 - intestinal absorption [Evidence IMP]; GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : vitamin D receptor protein_id : NP_033530.2

name	Tmem106c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41235747 CCDS:CCDS27785.1 GeneID:380967 MGI:1196384
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC380967 protein_id : NP_958747.1

name	Col2a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13624305 GeneID:12824 MGI:88452
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0001502 - cartilage condensation [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0030199 - collagen fibril organization [Evidence IMP]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0006029 - proteoglycan metabolism [Evidence IMP] codon_start : 1 exception : mismatches in translation note : disproportionate micromelia product : procollagen, type II, alpha 1 protein_id : NP_112440.1

name	Senp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450063 GeneID:223870 MGI:2445054
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0016926 - protein desumoylation [Evidence IMP] [Evidence IDA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : SUMO1/sentrin specific protease 1 protein_id : NP_659100.1

name	Pfkm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981185 CCDS:CCDS27786.1 GeneID:18642 MGI:97548
definition	GO_component : GO:0005945 - 6-phosphofructokinase complex [Evidence IEA] [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0003872 - 6-phosphofructokinase activity [Evidence ISS] [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008443 - phosphofructokinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006096 - glycolysis [Evidence IEA]; GO:0006110 - regulation of glycolysis [Evidence ISS] codon_start : 1 exception : mismatches in translation note : phosphofructokinase-1 A isozyme; phosphofructokinase-M (connecting peptide) product : phosphofructokinase, muscle protein_id : NP_067489.2

name	Asb8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560038 CCDS:CCDS27787.1 GeneID:78541 MGI:1925791
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] codon_start : 1 exception : mismatches in translation product : ankyrin repeat and SOCS box-containing protein 8 protein_id : NP_084397.2

name	AI836003 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244182 GeneID:239650 MGI:2146066
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC239650 protein_id : NP_808384.1

name	Olfr288 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111185920 GeneID:545140 MGI:3030122
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x6K02T2NBG7-5568919-5569857; olfactory receptor MOR286-3P; olfactory receptor GA_x5J8B7W76D0-7609197-7608973 product : olfactory receptor 288 protein_id : NP_001011733.2

name	LOC634104 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149266753 GeneID:634104
definition	codon_start : 1 product : similar to olfactory receptor Olfr287 protein_id : XP_998835.2

name	LOC667894 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667894
definition	number : 2 pseudo : _no_value

name	LOC667894 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667894
definition	number : 1 pseudo : _no_value

name	LOC667941 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667941
definition	number : 1 pseudo : _no_value

name	LOC546651 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546651
definition	number : 1 pseudo : _no_value

name	LOC100042774 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042774
definition	number : 3 pseudo : _no_value

name	LOC100042774 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042774
definition	number : 2 pseudo : _no_value

name	LOC100042774 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042774
definition	number : 1 pseudo : _no_value

name	LOC100043354 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266806 GeneID:100043354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins product : similar to high mobility group box 1 pseudo : _no_value transcript_id : XR_034778.1

clone name	MSMg01-497F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543E08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-299A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363E18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-403O03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-527A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158B04
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-416L10.T7 (MSMg01no416_l10.b1)	MSMg01-416L10.TJ (MSMg01no416_l10.g1)
ACC	AG512465	AG512466
length	735	789
length of high quality (start - end)	403 (36 - 438)	34 (68 - 101)
definition	CHROMAT_FILE: MSMg01no416_l10.b1 PHD_FILE: MSMg01no416_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:24 2005	CHROMAT_FILE: MSMg01no416_l10.g1 PHD_FILE: MSMg01no416_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:24 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGC TATTCTGGGACTCATCACAGCTAAGCTAACCTGCAATTCCCGATAGTCCT ATCTCCACCTCCTGAATGCGGGATTACATGTAAGTGTGCGAGCGTTCTCC TCTTAAGAGTATTCCTAACAGAGAGAACCCCCTTCGGTGGCCTTGTATAG ATAAAATTGAAGTGGACTTTTAAGTGACAAATTGTTGGAATACCGGAGAA GTTGTCTGTAAGCCCCTATAGAGAGTTCTGAATGCGATGCCCAAGATCTG CATCGTCCGTTTTCCTTTTGCAGGATGAAATCTGCCTCTGCACCTAACTT GACACTAACACACGGGAGTGAGTTGGTAGGAAAGAAAGGTTTCTGAAGTG GCAGATCACAGGCAGCCTCTCAAAGTATAGTGCCTGCAAAGTGAGCAACA TCGAAAGCGTCCAGGAGAGACACCGGTGGAGGGGCTAAGTAGGTCACACA GACGTCATCTTAAGACCTATGTCTTTTCGCTCTTTTGATTGTTTCTGAGA TTGTTATTTAATCCTGACGGTTCTCCCTTTCTTCCCACCATTCTTGGCCA TGGAACCTCCCTCCCACCTTCAAATTCACACCCTCTTTTTCTTCCATTGT TACTGTGGTGTCTATCATGGAATTTGCTCCATTCCATATATATTTTCTTA GATAAATACCTTGTTTGCAGCTGCCTAATTCTGTC	CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXTCAGAGATTCTCATTGTCCTGGGGGGGGCGGGGGGGGGGG AAGAAGGNNCATATACCCCGNAGGAGGGAGACCACGAGCACCCCAGCGAG CCTCTGTTTCCATGGGGGGGTGAGGATTACTTCACAACCCGACCACGTCC ACACCCTCTGCCCCCCTCGACCCGCACAGGCTCTGCCGCGGGGCCCTTTT TTTCTCCACTTTTCATTCTATCTGTCTCTTTTCCCGCCCCCGCAGAGCAC GCACAAACAGGTTTAAGTGGATTTTTGAGGGACAACNAGACCCGGCTTGA ACTTTTTTTTTCCCCCCCCCCTCCCTGGCGGGGGCGTTCTCTTTCCTCTT TCTACCTACGCTCCCCTCCCTCTATCCTTTGTCACTTTCTCCCCTCTTCT CTTTCCATCCTCTCTCCATCCTCGTTCTCTCATTCTTCCCCTTCTCTGTC TCTTTCCTCCCCTTTCCCTATATCTTCCCTTACTCCCCACCCTCTTTCCT ATCTTCCCTCCTTTCCTTCTCCTTTTCCCTCTCTCTTCCCTTTCCTTTTT CTTTTCCTCTCTTTTCATTACAACCCTCTTCTCCTCTCTACATATCTATC TATTCTTCCCTCACCCGATCGCTCCAGACCTCCTTCCACTTCCACTCTTT TCTTTTTCTCTTCCTATCCAACCTTCCTCTCTCCTTTATTCTTCAATTCT CTTTTCCTTTATTCACCTGTCCCTAACTTATATACCTCA
quality values	Open. Hide. 9 9 19 15 22 17 17 11 9 9 14 19 33 33 41 30 27 20 16 16 9 15 8 9 8 7 7 7 12 12 19 19 21 16 16 21 30 59 59 35 35 31 31 31 28 33 30 30 17 19 9 9 7 8 7 7 7 12 16 25 27 27 33 33 33 33 47 47 53 53 53 57 57 59 57 57 57 57 57 50 57 53 53 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 47 47 47 50 59 59 59 57 57 57 57 57 68 57 57 42 41 41 41 41 48 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 52 52 50 50 46 50 50 50 52 57 57 57 68 68 57 57 54 54 50 50 50 50 50 50 68 68 59 59 59 59 57 59 59 59 59 59 59 59 68 68 59 59 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 68 59 59 59 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 43 44 39 43 42 44 44 54 54 57 57 57 68 68 68 68 68 68 68 68 59 59 54 57 57 57 57 57 57 54 54 59 57 57 57 57 57 57 59 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 50 50 50 50 59 41 30 26 14 14 12 14 13 14 13 15 15 24 41 41 50 48 48 48 48 57 57 57 57 57 57 57 50 53 53 53 53 53 57 59 59 59 59 59 54 57 59 54 54 59 46 46 43 43 39 43 48 48 54 54 54 54 54 54 48 42 43 22 22 12 11 11 26 27 57 57 48 48 43 43 43 43 57 59 57 57 57 48 39 39 39 39 37 33 50 50 42 41 39 43 32 25 25 30 30 37 37 37 37 35 35 32 39 32 32 30 32 32 36 43 27 33 28 28 17 17 12 12 12 23 23 31 23 23 23 28 30 28 20 28 18 15 8 6 6 8 10 21 25 34 23 21 13 13 13 14 11 15 10 10 10 15 27 24 24 17 14 14 14 14 25 26 19 18 22 19 15 15 15 15 30 22 24 15 13 13 16 17 15 8 8 8 10 9 10 19 19 22 19 25 12 12 12 16 20 11 11 11 18 18 28 23 17 10 8 10 8 8 9 14 19 30 27 28 24 24 19 25 31 31 28 31 31 37 39 33 27 15 8 8 8 8 11 14 18 18 16 12 10 10 10 10 10 12 6 6 8 8 9 9 11 9 9 8 8 8 10 23 17 15 8 8 8 8 11 21 11 13 13 16 22 25 11 11 11 18 18 32 24 21 10 10 10 8 10 8 6 6 7 11 8 8 8 8 8 8 8 8 8 15 8 8 8 8 8 8 8 8 8 8 8 11 8 9 9 19 12 10 10 10 10 13 10 9 10 10 17 13 14 13 8 8 10 9 9 9 11 13 11 19 13 17 11 11 11 8 10 10 8 8 8 8 8 8 10 10 13 8 8 6 6 6 6 9 14 10 10 10 12 12 13 12 12 15 15 15 9 11 10 10 10 8 8 6 6 6 6 8 8 8 8 8 9 10 10 8 8 8 8 8 10 12 12 8 8 8 8 10 8 11 8 8 8 15 8 9 9 10 9 9 10 11 11 12 12 18 13	Open. Hide. 13 19 15 14 11 9 8 9 10 8 8 8 12 14 35 35 37 44 39 23 23 19 14 14 14 30 25 13 9 9 9 9 9 9 9 9 10 17 19 28 28 28 37 44 33 33 33 33 33 33 41 39 25 14 3 0 3 6 6 6 6 6 6 6 6 6 10 20 25 30 30 30 30 32 32 41 44 44 44 47 47 59 59 59 59 59 59 57 43 43 37 43 44 57 57 48 59 30 30 12 12 12 27 27 27 20 3 0 0 3 10 10 10 10 12 11 9 12 10 3 0 3 15 15 16 16 12 12 11 14 8 8 8 10 8 8 8 8 8 10 12 16 11 11 11 9 8 8 8 8 8 8 11 8 9 11 11 16 11 10 10 10 11 11 11 10 10 10 10 10 8 8 8 8 10 8 8 8 8 8 8 8 11 11 11 11 12 12 15 15 14 14 10 8 8 8 8 8 10 10 10 10 10 15 15 16 11 11 15 21 17 23 16 20 10 8 8 7 7 8 8 10 8 8 6 6 8 8 8 8 8 12 11 11 11 10 8 8 8 8 8 8 10 8 9 10 12 13 21 32 21 10 8 12 10 10 8 10 10 12 9 11 11 11 9 9 10 11 8 9 9 10 12 6 6 8 8 11 11 12 12 10 10 10 10 10 11 15 13 9 9 9 9 8 8 6 6 8 8 8 8 10 10 10 10 8 8 8 8 8 8 7 9 8 8 8 8 7 6 6 6 6 7 8 8 8 10 12 12 16 10 9 9 9 9 3 0 3 16 9 8 8 8 8 6 6 8 8 6 6 8 8 8 8 15 19 28 29 29 16 14 14 14 14 16 31 32 32 32 18 10 8 8 8 8 8 9 8 8 8 8 8 8 6 6 8 8 8 8 8 13 19 11 10 11 21 19 19 12 11 10 11 10 10 10 8 8 6 6 6 6 10 10 16 10 10 9 11 8 8 8 8 8 8 9 10 10 13 18 10 8 8 6 6 8 8 8 8 10 10 11 11 9 8 8 8 10 8 8 9 10 9 11 8 8 8 8 8 8 10 14 19 14 10 8 8 8 8 8 8 11 8 6 6 6 6 6 6 8 8 12 10 10 10 8 8 8 13 11 10 9 9 9 9 10 10 9 8 9 10 10 10 10 8 8 8 8 8 8 10 11 12 10 10 7 6 8 8 8 9 10 10 11 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 10 13 8 10 7 7 10 8 10 8 8 8 8 8 8 12 8 9 9 9 9 11 11 12 12 10 13 8 8 8 8 8 8 10 10 14 10 10 10 10 9 10 9 9 8 8 8 8 8 8 10 8 10 10 10 9 9 9 7 10 8 8 8 12 13 8 8 8 8 8 15 10 22 20 10 10 6 6 8 6 6 8 8 11 8 8 8 8 8 8 10 10 11 12 10 10 8 8 8 8 9 9 10 11 11 11 9 9 8 8 8 8 9 8 8 7 6 8 6 8 8 10 8 10 9 13 8 8 8 8 7 6 8 8 8 10 8 8 6 9 10 10 10 11 11 8 8 6 7 8 10 10 8 8 8 8 9 9 9 15 14 11 11 11 15 10 10 6 8 7 7 10 8 9 11 9 9 8 8 8 8 8 8 11 11 9 8 8 10 10 9 9 8 8 8 8 8 10 6 7 8 8 7 7 6 8 8 8 8 6 6 8 8 10 10 10 10 10 10 10 10 10 12 12 12 12 10 10 10 10 10 11 10 10 10 9 9 9 9 10 9 8 10 8 8 8 9 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no416_l10.b1 MSMg01no416_l10.b1 CHROMAT_FILE:
MSMg01no416_l10.b1 PHD_FILE: MSMg01no416_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:24 2005
         (403 letters)



>mm_chr15_97056346_97057148
          Length = 803

 Score =  611 bits (316), Expect = e-179
 Identities = 371/400 (92%), Gaps = 18/400 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggctattctgggactcatcacagctaagctaacctgcaattcccgatagtcc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 221 gaattccaggctagtctgggactcatcacagctaagctaacctgcaactcccgatagtcc 280

                                                                       
Query: 65  tatctccacctcctgaatgc-gggattacatgtaagtgtgcgagcgttctcctcttaaga 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tatctccacctcctgaatgctgggattacatgtaagtgtgcgagcgttctcctcttaaga 340

                                                                       
Query: 124 gtattcctaacagagagaacccccttcggtggccttgtatagataaaattgaagtggact 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 341 gtattcctaacagagagaacccccttcggtggccttgtatagataagattgaagtggact 400

                                                                       
Query: 184 tttaagtgacaaattgttggaataccggagaagttgtctgtaagcccctatagagagttc 243
           |||||||||||||||||||                 ||||||||||||||||||||||||
Sbjct: 401 tttaagtgacaaattgttg-----------------tctgtaagcccctatagagagttc 443

                                                                       
Query: 244 tgaatgcgatgcccaagatctgcatcgtccgttttccttttgcaggatgaaatctgcctc 303
           |||||| |||||||||||||||||||| |||   |||||||||||||||||||||| |||
Sbjct: 444 tgaatgtgatgcccaagatctgcatcgcccggcgtccttttgcaggatgaaatctggctc 503

                                                                       
Query: 304 tgcacctaacttgacactaacacacgggagtgagttggtaggaaagaaaggtttctgaag 363
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 tgcacctaacttgacactaacacacgggagggagttggtaggaaagaaaggtttctgaag 563

                                                   
Query: 364 tggcagatcacaggcagcctctcaaagtatagtgcctgca 403
           ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 tggcagatcacaggcagcctctcaaaggatagtgcctgca 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information