BAC Information

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BAC

Clone NameMSMg01-417C04
Chromosome15 (Build37)
Map Location 74,856,195 - 74,856,816
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a
Downstream geneLy6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417C04.T7 (MSMg01no417_c04.b1)MSMg01-417C04.TJ (MSMg01no417_c04.g1)
ACCAG512788AG512789
length730755
length of high quality
(start - end)
626 (54 - 679)561 (77 - 637)
definitionCHROMAT_FILE: MSMg01no417_c04.b1 PHD_FILE: MSMg01no417_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:55 2005CHROMAT_FILE: MSMg01no417_c04.g1 PHD_FILE: MSMg01no417_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGAGGGGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAAGGTATTATGCCATCAGCATCCATGCAGAAATATC
TGGGGTCCTGCAGGCTTTCCACGTGTGCAGCTCAATGTCCCCGTGCTGAG
TCTAATAAACCCTTTGTTCTCCCAGCTAAGGTCTCCCTTTTTCTTTTGCT
GCTCTGAGTCTACGGAGTCCTGCCTGCCAGGTCATATCTGTGCCCTTTCA
GCTGGCCATACTAGCTAGCTCGTGTTAGCCAGTTCAGTGTAGTTGAATAC
TTGGTTTGGGTGGGCTAATGCTGGGGGAAAAGAGAGGGTTCCCCCACTTC
CAAAGAGCACTTGCTTGTGGTGCGGAATAACACAGGAGATGAGCCCTCAT
CGGTGGGCGGGGCTGCCCTGTCAGATTTTTTTTTTCCAGAGATTGAAGCC
ATTTCCTGTAGGTGCTCATGGCTTGGCTCAGAGCAAACAAAGCGTCACAC
TGCCTTTCCTGAAGTCCTACTCTATATGGGATGCCCCCAGTGGAAAGGTC
TGACTTGACACATTAACAACCAGGGATCCATCACTGGGACATGAAACTTG
AGTCATGAGTAAGGATTCTGGAGACTTCTCCTANATTAAGCTTTGATTCT
GTTGCAGTTTCTTCTGGCCTCTGCTTCCAATGCTTGATTTGCAAGTATGT
ACTCACTACCACCCTGGTCATTCCCTATGG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTTGCCCAGTT
TTAAAATAGGATTATTTGGTTCTCTGGTGTCTAACTTCTTGAGTTCTTTT
ATATATATTGGATATTAGCCTCTATCAGATGTGGGCTTGGTAAAGATCTT
TTCAGAATCTGTTGGTTACCATTTTGTCCTGTTGACAGTGTCTTTTGCCT
TACAGTGTCTTTTGCCTTACAGTGTCTTTGCAATTTAATGAGGTCCCATT
TGTCGATTCTTCATCTTATAGCATAAGGCATTGGTGTTCTGTTCAGGAAC
TTTTACCCTGTGCCCATGTGTTCAATAAGTTTCCCAACATTCTCTTCTAT
TAGATTCAGTGTATCTGGTTTTATGTGGAGGTCCTTGATCCACTTGGACT
TAGCTTTATACAGGGGGATAAGAATGGATCAATTTGCATTCTTCTACACG
TTGAACCATCACCATTTGTTGAAAATATTGTCTTTTTTCTACTGGATGAT
TTTAGCTCCTTTGTCAAAGATCAAGTGACAATAGGTGTGTGGGTTCATTT
CTCATTCTTCAATTCTATTGCATCGATCTACTTGCCCATCACTGTACCCA
TAACATGCAGTTTTTAATCACTATTGCTTTGTAGTACAGCTTGAGGTCAG
TGATGGTGATTTCCCCAGAAATTCTTTTATTGTTGACAATACGTTTCACT
ATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_c04.b1 MSMg01no417_c04.b1 CHROMAT_FILE:
MSMg01no417_c04.b1 PHD_FILE: MSMg01no417_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:55 2005
         (626 letters)



>mm_chr15_74855991_74857016
          Length = 1026

 Score = 1181 bits (611), Expect = 0.0
 Identities = 619/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaggtattatgccatcagcatccatgcagaaatatctggggtcctgcaggctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaggtattatgccatcagcatccatgcagaaatatctggggtcctgcaggctt 264

                                                                       
Query: 65  tccacgtgtgcagctcaatgtccccgtgctgagtctaataaaccctttgttctcccagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccacgtgtgcagctcaatgtccccgtgctgagtctaataaaccctttgttctcccagct 324

                                                                       
Query: 125 aaggtctccctttttcttttgctgctctgagtctacggagtcctgcctgccaggtcatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaggtctccctttttcttttgctgctctgagtctacggagtcctgcctgccaggtcatat 384

                                                                       
Query: 185 ctgtgccctttcagctggccatactagctagctcgtgttagccagttcagtgtagttgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtgccctttcagctggccatactagctagctcgtgttagccagttcagtgtagttgaa 444

                                                                       
Query: 245 tacttggtttgggtgggctaatgctgggggaaaagagagggttcccccacttccaaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacttggtttgggtgggctaatgctgggggaaaagagagggttcccccacttccaaagag 504

                                                                       
Query: 305 cacttgcttgtggtgcggaataacacaggagatgagccctcatcggtgggcggggctgcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacttgcttgtggtgcggaataacacaggagatgagccctcatcggtgggcggggctgcc 564

                                                                       
Query: 365 ctgtcagattttttttttccagagattgaagccatttcctgtaggtgctcatggcttggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtcagattttttttttccagagattgaagccatttcctgtaggtgctcatggcttggc 624

                                                                       
Query: 425 tcagagcaaacaaagcgtcacactgcctttcctgaagtcctactctatatgggatgcccc 484
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcagagcaaacaaagcatcacactgcctttcctgaagtcctactctatatgggatgcccc 684

                                                                       
Query: 485 cagtggaaaggtctgacttgacacattaacaaccagggatccatcactgggacatgaaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagtggaaaggtctgacttgacacattaacaaccagggatccatcactgggacatgaaac 744

                                                                       
Query: 545 ttgagtcatgagtaaggattctggagacttctcctanattaagctttgattctgttgcag 604
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 745 ttgagtcatgagtaaggattctggagacttctcctaaattaagctttgactctgttgcag 804

                                 
Query: 605 tttcttctggcctctgcttcca 626
           ||||||||||||||||||||||
Sbjct: 805 tttcttctggcctctgcttcca 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)